2DJ6A

Crystal structure of 6-pyruvoyl tetrahydrobiopterin synthase from pyrococcus horikoshii ot3
Total Genus 29
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
29
sequence length
115
structure length
105
Chain Sequence
MKSRIIVRTSFDAAHAHGHTFFLEVAIEGEIKNGYVMDFLELRKIVEEITKELDHRNLNNIFENPTTENIALWIGERIRDKLPPYVKLKRVVLWEGKDNGVELEW
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
molecule keywords hypothetical protein PH0634
publication title Crystal structure of 6-pyruvoyl tetrahydrobiopterin synthase from Pyrococcus horikoshii OT3
rcsb
source organism Pyrococcus horikoshii
total genus 29
structure length 105
sequence length 115
chains with identical sequence B, C
ec nomenclature ec 4.2.3.12: 6-pyruvoyltetrahydropterin synthase.
pdb deposition date 2006-03-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01242 PTPS 6-pyruvoyl tetrahydropterin synthase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.479.10 Alpha Beta 2-Layer Sandwich Tetrahydropterin Synthase; Chain A Tetrahydropterin Synthase; Chain A 2dj6A00
2OBAA 3LZEA 3I2BA 1Y13A 3QNAA 4NTNA 1B6ZA 4NTKA 1GTQA 2DJ6A 3D7JA 2G64A 4NTMA 2A0SA 3M0NA 3LX3A 3JYGA 3QN0A 2DTTA 3QN9A 1B66A
chains in the Genus database with same CATH superfamily
2OBAA 3LZEA 3I2BA 1Y13A 3BK6A 3QNAA 4NTNA 1B6ZA 4NTKA 1GTQA 4FVJA 1TFEA 1AIPC 1WINA 2DJ6A 3D7JA 1EFUB 1XB2B 2G64A 4NTMA 2A0SA 3M0NA 3LX3A 2RPBA 3JYGA 3QN0A 4Q7JA 4FVGA 2DTTA 3QN9A 4FVFA 1B66A
chains in the Genus database with same CATH topology
2OBAA 3LZEA 3I2BA 1Y13A 3BK6A 3QNAA 4NTNA 1B6ZA 4NTKA 1GTQA 4FVJA 1WINA 2DJ6A 3D7JA 2G64A 4NTMA 2A0SA 3M0NA 3LX3A 2RPBA 3JYGA 3QN0A 4FVGA 2DTTA 3QN9A 4FVFA 1B66A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2OBA A;  3LZE A;  3I2B A;  1Y13 A;  3QNA A;  4NTN A;  1B6Z A;  4NTK A;  1GTQ A;  2DJ6 A;  3D7J A;  2G64 A;  4NTM A;  2A0S A;  3M0N A;  3LX3 A;  3JYG A;  3QN0 A;  2DTT A;  3QN9 A;  1B66 A; 
#chains in the Genus database with same CATH topology
 2OBA A;  3LZE A;  3I2B A;  1Y13 A;  3BK6 A;  3QNA A;  4NTN A;  1B6Z A;  4NTK A;  1GTQ A;  4FVJ A;  1TFE A;  1AIP C;  1WIN A;  2DJ6 A;  3D7J A;  1EFU B;  1XB2 B;  2G64 A;  4NTM A;  2A0S A;  3M0N A;  3LX3 A;  2RPB A;  3JYG A;  3QN0 A;  4Q7J A;  4FVG A;  2DTT A;  3QN9 A;  4FVF A;  1B66 A; 
#chains in the Genus database with same CATH homology
 2OBA A;  3LZE A;  3I2B A;  1Y13 A;  3BK6 A;  3QNA A;  4NTN A;  1B6Z A;  4NTK A;  1GTQ A;  4FVJ A;  1WIN A;  2DJ6 A;  3D7J A;  2G64 A;  4NTM A;  2A0S A;  3M0N A;  3LX3 A;  2RPB A;  3JYG A;  3QN0 A;  4FVG A;  2DTT A;  3QN9 A;  4FVF A;  1B66 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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