The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
192
|
sequence length |
538
|
structure length |
538
|
Chain Sequence |
VAAERLEPRVEEKDGYWILKEQFRKGINPQEKVKIEKEPMKLFMENGIEELAKIPIEEIDQSKLTKDDIDVRLKWLGLFHRRKNQYGRFMMRLKLPNGVTTSAQTRYLASVIRKYGKEGCADITTRQNWQIRGVVLPDVPEILKGLAEVGLTSLQSGGDNVRNPVGNPLAGIDPEEIVDTRPYTNLLSQFITGNSRGNPAVSNLPRKWNPCVVGSHDLYEHPHINDLAYMPATKDGRFGFNLLVGGFFSAKRCDEAIPLDAWVPADDVVPVCRAILEAFRDLGFRGNRQKCRMMWLIDELGVEGFRAEVEKRMPQQQLERASPEDLVQKQWERRDYLGVHPQKQEGYSFIGLHIPVGRVQADDMDELARLADEYGSGEIRLTVEQNIIIPNIETSKIEALLKEPVLSTFSPDPPILMKGLVACTGNQFCGQAIIETKARSLKITEEVQRQVSLTKPVRMHWTGCPNTCAQVQVADIGFMGCLTRDKNGKTVEGADVFLGGRIGSDSHLGEVYKKAVPCDDLVPLVVDLLVNNFGAVPR
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Oxidoreductase
|
| molecule keywords |
Nitrite reductase
|
| publication title |
Structure-function relationship of assimilatory nitrite reductases from the leaf and root of tobacco based on high resolution structures
pubmed doi rcsb |
| source organism |
Nicotiana tabacum
|
| total genus |
192
|
| structure length |
538
|
| sequence length |
538
|
| ec nomenclature |
ec
1.7.7.1: Ferredoxin--nitrite reductase. |
| pdb deposition date | 2011-06-10 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01077 | NIR_SIR | Nitrite and sulphite reductase 4Fe-4S domain |
| A | PF03460 | NIR_SIR_ferr | Nitrite/Sulfite reductase ferredoxin-like half domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | Sulfite Reductase Hemoprotein; domain 1 | Sulfite Reductase Hemoprotein, domain 1 | ||
| Alpha Beta | 2-Layer Sandwich | Sulfite Reductase Hemoprotein; domain 1 | Sulfite Reductase Hemoprotein, domain 1 | ||
| Alpha Beta | Alpha-Beta Complex | Sulfite Reductase Hemoprotein; domain 2 | Sulfite Reductase Hemoprotein; domain 2 |
#chains in the Genus database with same CATH superfamily 4S3A A; 3MMB B; 3MMB A; 6GEP A; 2Y0F A; 3VKP A; 3VM1 A; 3VM0 A; 5GEP A; 4S3E A; 4S3C A; 5AOP A; 3MMC B; 3MMC A; 4G38 A; 4S3D A; 4S3F A; 4S38 A; 3VKQ A; 4AOP A; 1ZJ8 A; 3VKR A; 3B0G A; 3B0H A; 8GEP A; 3B0J A; 2GEP A; 3GEO A; 3VKT A; 3MM8 B; 3MM8 A; 4GEP A; 4HTR A; 3B0L A; 3VKS A; 3NOY A; 4G39 A; 4S3B A; 3MM6 B; 3MM6 A; 3VLX A; 7GEP A; 3MM5 B; 3MM5 A; 3OR1 B; 4S39 A; 3MMA B; 3AOP A; 3MMA A; 4S23 A; 1ZJ9 A; 2V4J B; 3OR1 A; 3VLY A; 2AOP A; 2AKJ A; 3B0N A; 2V4J A; 2XSJ B; 2XSJ A; 3MM7 B; 3B0M A; 3MM7 A; 3MM9 B; 3MM9 A; 3OR2 A; 3OR2 B; 4G9P A; 3VLZ A; 1AOP A; #chains in the Genus database with same CATH topology 4S3A A; 3MMB B; 3MMB A; 6GEP A; 2Y0F A; 3VKP A; 3VM1 A; 3VM0 A; 5GEP A; 4S3E A; 4S3C A; 5AOP A; 3MMC B; 3MMC A; 4G38 A; 4S3D A; 4S3F A; 4S38 A; 3VKQ A; 4AOP A; 1ZJ8 A; 3VKR A; 3B0G A; 3B0H A; 8GEP A; 3B0J A; 2GEP A; 3GEO A; 3VKT A; 3MM8 B; 3MM8 A; 4GEP A; 4HTR A; 3B0L A; 3VKS A; 3NOY A; 4G39 A; 4S3B A; 3MM6 B; 3MM6 A; 3VLX A; 7GEP A; 3MM5 B; 3MM5 A; 3OR1 B; 4S39 A; 3MMA B; 3AOP A; 3MMA A; 4S23 A; 1ZJ9 A; 2V4J B; 3OR1 A; 3VLY A; 2AOP A; 2AKJ A; 3B0N A; 2V4J A; 2XSJ B; 2XSJ A; 3MM7 B; 3B0M A; 3MM7 A; 3MM9 B; 3MM9 A; 3OR2 A; 3OR2 B; 4G9P A; 3VLZ A; 1AOP A; #chains in the Genus database with same CATH homology 4S3A A; 3MMB B; 3MMB A; 6GEP A; 2Y0F A; 3VKP A; 3VM1 A; 3VM0 A; 5GEP A; 4S3E A; 4S3C A; 5AOP A; 3MMC B; 3MMC A; 4G38 A; 4S3D A; 4S3F A; 4S38 A; 3VKQ A; 4AOP A; 1ZJ8 A; 3VKR A; 3B0G A; 3B0H A; 8GEP A; 3B0J A; 2GEP A; 3GEO A; 3VKT A; 3MM8 B; 3MM8 A; 4GEP A; 4HTR A; 3B0L A; 3VKS A; 3NOY A; 4G39 A; 4S3B A; 3MM6 B; 3MM6 A; 3VLX A; 7GEP A; 3MM5 B; 3MM5 A; 3OR1 B; 4S39 A; 3MMA B; 3AOP A; 3MMA A; 4S23 A; 1ZJ9 A; 2V4J B; 3OR1 A; 3VLY A; 2AOP A; 2AKJ A; 3B0N A; 2V4J A; 2XSJ B; 2XSJ A; 3MM7 B; 3B0M A; 3MM7 A; 3MM9 B; 3MM9 A; 3OR2 A; 3OR2 B; 4G9P A; 3VLZ A; 1AOP A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
