3OW2Q

Crystal structure of enhanced macrolide bound to 50s ribosomal subunit
Total Genus 38
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
38
sequence length
150
structure length
150
Chain Sequence
GISYSVEADPDTTAKAMLRERQMSFKHSKAIAREIKGKTAGEAVDYLEAVIEGDQPVPFKQHNSGVGHKSKVDGWDAGRYPEKASKAFLDLLENAVGNADHQGFDGEAMTIKHVAAHKVGEQQGRKPRAMGRASAWNSPQVDVELILEEP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 23S RIBOSOMAL RNA
total genus 38
structure length 150
sequence length 150
ec nomenclature
pdb deposition date 2010-09-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
Q PF00237 Ribosomal_L22 Ribosomal protein L22p/L17e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.470.10 Alpha Beta Alpha-Beta Complex Ribosomal Protein L22; Chain A Ribosomal protein L22/L17 3ow2Q00
3J7ZS 2OTJR 1BXEA 1Q82S 3CCMR 1KQSQ 5JVHP 1VQLR 1JJ2Q 1K8AS 5DM7P 1VQ6R 2QEXR 3I56R 5GAHT 5HL7P 3PIOP 3CCER 3CCRR 1VQNR 4UY8S 3CD6R 3G6ER 3CCQR 2ZJQP 1VQ8R 3CCJR 4WFAP 5JVGP 3J7YT 1YIJR 1W2BQ 3G71R 4WFBP 1QVGQ 1K73S 3CCVR 2QA4R 1KC8S 2ZJPP 3CPWQ 5DM6P 3CMER 1S72R 1YJWR 4U67P 1QVFQ 3CMAR 2OTLR 3CCUR 1YITR 1YJ9R 5GAGT 5GAET 1M1KS 1VQ4R 3CC2R 1Q81S 5H1SU 3CXCQ 4IOCP 1VQ5R 3CCLR 1YHQR 4IO9P 5MLCU 1N8RS 2ZJRP 1VQ7R 1VQKR 3CC7R 3CC4R 3OW2Q 3I55R 4WF9P 1VQOR 3PIPP 3CF5P 3DLLP 3CCSR 1YI2R 1Q7YS 1KD1S 1VQMR 4WFNP 4IOAP 1I4JA 4WCEP 4V19W 1Q86S 3G4SR 1YJNR 5GADT 1VQ9R 1M90S 1NJIS 1K9MS 1VQPR
chains in the Genus database with same CATH superfamily
3J7ZS 2OTJR 1BXEA 3NE9A 1Q82S 3CCMR 1KQSQ 5JVHP 1VQLR 1JJ2Q 1F7LA 3NFDA 2WATA 1K8AS 4DXEA 5DM7P 2JBZA 1VQ6R 2QG8A 2QEXR 3I56R 5GAHT 5HL7P 3PIOP 3NE3B 4HC6A 3CCER 3CCRR 4MRTA 4UY8S 1VQNR 3CD6R 3NE1A 3G6ER 2D0OA 2WASA 2WASB 3CCQR 2ZJQP 1VQ8R 3CCJR 5CXDA 4WFAP 5JVGP 3J7YT 1YIJR 1W2BQ 3G71R 4WFBP 1QVGQ 1K73S 5CMOA 3CCVR 2QA4R 1FTHA 1KC8S 2ZJPP 3CPWQ 5DM6P 3CMER 1S72R 2JCAA 1YJWR 4U67P 1QVFQ 2D0PA 3CMAR 2OTLR 3CCUR 1FTFA 1F7TA 1YJ9R 1YITR 3HYKA 1FTEA 5GAGT 5GAET 1M1KS 1VQ4R 3CC2R 1Q81S 5H1SU 3CXCQ 4IOCP 1F80A 1VQ5R 3CCLR 1YHQR 3QMNA 4IO9P 5MLCU 1QR0A 2WDSA 1N8RS 2ZJRP 1VQ7R 1VQKR 3CC7R 3CC4R 3OW2Q 3I55R 2CG5A 4WF9P 2C43A 2BYDA 1VQOR 3PIPP 3CF5P 3DLLP 3CCSR 1YI2R 3GWMA 1Q7YS 4JM7A 1KD1S 2WDYA 1VQMR 2BDDA 4WFNP 4IOAP 1I4JA 1NBWA 2WDOA 4WCEP 4V19W 1Q86S 3G4SR 1YJNR 5GADT 1VQ9R 3H7QA 1M90S 3HQJA 1NJIS 1K9MS 1VQPR
chains in the Genus database with same CATH topology
3J7ZS 2OTJR 1BXEA 1Q82S 3CCMR 1KQSQ 5JVHP 1VQLR 1JJ2Q 1K8AS 5DM7P 1VQ6R 2QEXR 3I56R 5GAHT 5HL7P 3PIOP 3CCER 3CCRR 1VQNR 4UY8S 3CD6R 3G6ER 3CCQR 2ZJQP 1VQ8R 3CCJR 4WFAP 5JVGP 3J7YT 1YIJR 1W2BQ 3G71R 4WFBP 1QVGQ 1K73S 3CCVR 2QA4R 1KC8S 2ZJPP 3CPWQ 5DM6P 3CMER 1S72R 1YJWR 4U67P 1QVFQ 3CMAR 2OTLR 3CCUR 1YITR 1YJ9R 5GAGT 5GAET 1M1KS 1VQ4R 3CC2R 1Q81S 5H1SU 3CXCQ 4IOCP 1VQ5R 3CCLR 1YHQR 4IO9P 5MLCU 1N8RS 2ZJRP 1VQ7R 1VQKR 3CC7R 3CC4R 3OW2Q 3I55R 4WF9P 1VQOR 3PIPP 3CF5P 3DLLP 3CCSR 1YI2R 1Q7YS 1KD1S 1VQMR 4WFNP 4IOAP 1I4JA 4WCEP 4V19W 1Q86S 3G4SR 1YJNR 5GADT 1VQ9R 1M90S 1NJIS 1K9MS 1VQPR
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3J7Z S;  2OTJ R;  1BXE A;  1Q82 S;  3CCM R;  1KQS Q;  5JVH P;  1VQL R;  1JJ2 Q;  1K8A S;  5DM7 P;  1VQ6 R;  2QEX R;  3I56 R;  5GAH T;  5HL7 P;  3PIO P;  3CCE R;  3CCR R;  1VQN R;  4UY8 S;  3CD6 R;  3G6E R;  3CCQ R;  2ZJQ P;  1VQ8 R;  3CCJ R;  4WFA P;  5JVG P;  3J7Y T;  1YIJ R;  1W2B Q;  3G71 R;  4WFB P;  1QVG Q;  1K73 S;  3CCV R;  2QA4 R;  1KC8 S;  2ZJP P;  3CPW Q;  5DM6 P;  3CME R;  1S72 R;  1YJW R;  4U67 P;  1QVF Q;  3CMA R;  2OTL R;  3CCU R;  1YIT R;  1YJ9 R;  5GAG T;  5GAE T;  1M1K S;  1VQ4 R;  3CC2 R;  1Q81 S;  5H1S U;  3CXC Q;  4IOC P;  1VQ5 R;  3CCL R;  1YHQ R;  4IO9 P;  5MLC U;  1N8R S;  2ZJR P;  1VQ7 R;  1VQK R;  3CC7 R;  3CC4 R;  3OW2 Q;  3I55 R;  4WF9 P;  1VQO R;  3PIP P;  3CF5 P;  3DLL P;  3CCS R;  1YI2 R;  1Q7Y S;  1KD1 S;  1VQM R;  4WFN P;  4IOA P;  1I4J A;  4WCE P;  4V19 W;  1Q86 S;  3G4S R;  1YJN R;  5GAD T;  1VQ9 R;  1M90 S;  1NJI S;  1K9M S;  1VQP R; 
#chains in the Genus database with same CATH topology
 3J7Z S;  2OTJ R;  1BXE A;  3NE9 A;  1Q82 S;  3CCM R;  1KQS Q;  5JVH P;  1VQL R;  1JJ2 Q;  1F7L A;  3NFD A;  2WAT A;  1K8A S;  4DXE A;  5DM7 P;  2JBZ A;  1VQ6 R;  2QG8 A;  2QEX R;  3I56 R;  5GAH T;  5HL7 P;  3PIO P;  3NE3 B;  4HC6 A;  3CCE R;  3CCR R;  4MRT A;  4UY8 S;  1VQN R;  3CD6 R;  3NE1 A;  3G6E R;  2D0O A;  2WAS A;  2WAS B;  3CCQ R;  2ZJQ P;  1VQ8 R;  3CCJ R;  5CXD A;  4WFA P;  5JVG P;  3J7Y T;  1YIJ R;  1W2B Q;  3G71 R;  4WFB P;  1QVG Q;  1K73 S;  5CMO A;  3CCV R;  2QA4 R;  1FTH A;  1KC8 S;  2ZJP P;  3CPW Q;  5DM6 P;  3CME R;  1S72 R;  2JCA A;  1YJW R;  4U67 P;  1QVF Q;  2D0P A;  3CMA R;  2OTL R;  3CCU R;  1FTF A;  1F7T A;  1YJ9 R;  1YIT R;  3HYK A;  1FTE A;  5GAG T;  5GAE T;  1M1K S;  1VQ4 R;  3CC2 R;  1Q81 S;  5H1S U;  3CXC Q;  4IOC P;  1F80 A;  1VQ5 R;  3CCL R;  1YHQ R;  3QMN A;  4IO9 P;  5MLC U;  1QR0 A;  2WDS A;  1N8R S;  2ZJR P;  1VQ7 R;  1VQK R;  3CC7 R;  3CC4 R;  3OW2 Q;  3I55 R;  2CG5 A;  4WF9 P;  2C43 A;  2BYD A;  1VQO R;  3PIP P;  3CF5 P;  3DLL P;  3CCS R;  1YI2 R;  3GWM A;  1Q7Y S;  4JM7 A;  1KD1 S;  2WDY A;  1VQM R;  2BDD A;  4WFN P;  4IOA P;  1I4J A;  1NBW A;  2WDO A;  4WCE P;  4V19 W;  1Q86 S;  3G4S R;  1YJN R;  5GAD T;  1VQ9 R;  3H7Q A;  1M90 S;  3HQJ A;  1NJI S;  1K9M S;  1VQP R; 
#chains in the Genus database with same CATH homology
 3J7Z S;  2OTJ R;  1BXE A;  1Q82 S;  3CCM R;  1KQS Q;  5JVH P;  1VQL R;  1JJ2 Q;  1K8A S;  5DM7 P;  1VQ6 R;  2QEX R;  3I56 R;  5GAH T;  5HL7 P;  3PIO P;  3CCE R;  3CCR R;  1VQN R;  4UY8 S;  3CD6 R;  3G6E R;  3CCQ R;  2ZJQ P;  1VQ8 R;  3CCJ R;  4WFA P;  5JVG P;  3J7Y T;  1YIJ R;  1W2B Q;  3G71 R;  4WFB P;  1QVG Q;  1K73 S;  3CCV R;  2QA4 R;  1KC8 S;  2ZJP P;  3CPW Q;  5DM6 P;  3CME R;  1S72 R;  1YJW R;  4U67 P;  1QVF Q;  3CMA R;  2OTL R;  3CCU R;  1YIT R;  1YJ9 R;  5GAG T;  5GAE T;  1M1K S;  1VQ4 R;  3CC2 R;  1Q81 S;  5H1S U;  3CXC Q;  4IOC P;  1VQ5 R;  3CCL R;  1YHQ R;  4IO9 P;  5MLC U;  1N8R S;  2ZJR P;  1VQ7 R;  1VQK R;  3CC7 R;  3CC4 R;  3OW2 Q;  3I55 R;  4WF9 P;  1VQO R;  3PIP P;  3CF5 P;  3DLL P;  3CCS R;  1YI2 R;  1Q7Y S;  1KD1 S;  1VQM R;  4WFN P;  4IOA P;  1I4J A;  4WCE P;  4V19 W;  1Q86 S;  3G4S R;  1YJN R;  5GAD T;  1VQ9 R;  1M90 S;  1NJI S;  1K9M S;  1VQP R; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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