The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
30
|
sequence length |
139
|
structure length |
139
|
Chain Sequence |
MERKISRIHLVSEPSITHFLQVSWEKTLESGFVITLTDGHSAWTGTVSESEISQEADDMAMEKGKYVGELRKALLSGAGPADVYTFNFSKESCYFFFEKNLKDVSFRLGSFNLEKVENPAEVIRELICYCLDTIAENQA
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Dna binding protein/protein binding
|
| molecule keywords |
DNA repair protein XRCC4
|
| publication title |
XRCC4 Protein Interactions with XRCC4-like Factor (XLF) Create an Extended Grooved Scaffold for DNA Ligation and Double Strand Break Repair.
pubmed doi rcsb |
| source organism |
Homo sapiens
|
| total genus |
30
|
| structure length |
139
|
| sequence length |
139
|
| chains with identical sequence |
B, E, F
|
| ec nomenclature | |
| pdb deposition date | 2011-07-06 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Beta Complex | Dna Repair Protein Xrcc4; Chain: A, domain 1 | DNA double-strand break repair and VJ recombination XRCC4, N-terminal |
#chains in the Genus database with same CATH superfamily 5CHX A; 1FU1 A; 3SR2 A; 1IK9 A; 3II6 A; 4XA4 A; 3MUD A; 5CJ0 A; 3SR2 C; 3RWR D; 2QM4 A; 5CJ4 A; 3RWR A; 2R9A A; #chains in the Genus database with same CATH topology 3Q0Y A; 5CHX A; 1IK9 A; 3II6 A; 3RWR D; 4CKP A; 2Y3V A; 3PYI A; 3RWR A; 2Y3W A; 1FU1 A; 4GFC A; 4GEU A; 5CJ4 A; 3SR2 A; 3Q0X A; 4CKM A; 4CKN A; 4G79 A; 3MUD A; 4XA4 A; 4GEX A; 4GFA A; 5CJ0 A; 2QM4 A; 3SR2 C; 2R9A A; #chains in the Genus database with same CATH homology 5CHX A; 1FU1 A; 3SR2 A; 1IK9 A; 3II6 A; 4XA4 A; 3MUD A; 5CJ0 A; 3SR2 C; 3RWR D; 2QM4 A; 5CJ4 A; 3RWR A; 2R9A A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
