The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
22
|
sequence length |
125
|
structure length |
125
|
Chain Sequence |
ASDFQTGIHKIVIQQSGDTDSFEVSVSIGGADKGGPAKLYNDKGEYIGDSYSAQIRTATMSCCTNGNAFFMTCAGSVSSISEAGKRLHITVIGYIDDKEVNRLEKEYITDGNTLIETFSVSTKEI
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Structural genomics, unknown function
|
| molecule keywords |
uncharacterized protein DUF4425
|
| publication title |
Crystal structure of a domain of unknown function, DUF4425 (BVU_3708) from Bacteroides vulgatus ATCC 8482 at 1.35 A resolution
rcsb |
| source organism |
Bacteroides vulgatus
|
| total genus |
22
|
| structure length |
125
|
| sequence length |
125
|
| chains with identical sequence |
B
|
| ec nomenclature | |
| pdb deposition date | 2011-10-12 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Sandwich | Lipoxygenase-1 | Lipoxygenase-1 |
#chains in the Genus database with same CATH superfamily 3U6G A; 4QEY A; 2LRG A; #chains in the Genus database with same CATH topology 1FGO A; 1HU9 A; 1BU8 A; 3V99 A; 3V98 A; 3O8Y A; 2SBL A; 2QZ7 A; 2IUJ A; 1RRL A; 2XHH A; 1RP1 A; 1ROV A; 1FGM A; 1FGR A; 1ETH A; 2P0M A; 1NO3 A; 2WY6 A; 2PPL A; 1KHO A; 2XHJ A; 1JNQ A; 1CA1 A; 3BND A; 2PVS A; 2OXE A; 1W52 X; 3PZW A; 1OLP A; 1LNH A; 3FG4 A; 2LRG A; 1GYG A; 2XFE A; 5EEO A; 2QNG A; 4NRE A; 2FNQ A; 1LPA B; 1GPL A; 1F8N A; 3BNC A; 1QMD A; 1LPB B; 1FGT A; 1QM6 A; 4QEY A; 2LG7 A; 1N8S A; 2IUK A; 2WXU A; 3CWZ B; 3VF1 A; 4WHA A; 1FGQ A; 1Y4K A; 2KXT A; 3IBZ A; 3U6G A; 1YGE A; 4QWT A; 1N8Q A; 1RRH A; 4WFO A; 3FG3 A; 1HPL A; 2WXT A; 2LGE A; 1IK3 A; 3BNB A; 3V92 A; 2XFD A; 1LOX A; 3FG1 A; 2KXV A; 3BNE A; #chains in the Genus database with same CATH homology 2XHH A; 2XHJ A; 2XFE A; 2XFD A; 4QEY A; 2LG7 A; 2LGE A; 3U6G A; 2LRG A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
