The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
77
|
sequence length |
347
|
structure length |
328
|
Chain Sequence |
SEEIVLKAGGKIYQGWTKIGITRSLEAMSGAFDLEMTYKFLGNDAQYKAFIEPIKQGQACTVDIGGERVITGYVDDWVPSYDESTITISVSGRDKTADLVDCSIDYPSGQFNNQTLTQIADIVCKPFGIKVIVNTDVGEPFQRIQIEQGETPHELLARLAKQRGVLLTSDTFGNLVITRASKTKAGVSLILGDNVKAARGRFSWRQRFSKFTIKAAKADVTDSEIGRYRPLIIVNEEVTAEGAAKRGQWERQRSIGKSNMAEYTVTGWRIPQTGKLWNINTLVPVIDEIMGLDEEMLIASILFSEDDAGRLAVISVVRPDAMDIPAQI
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Structural protein
|
| molecule keywords |
Prophage MuSo2, 43 kDa tail protein
|
| publication title |
Crystal structure of prophage MuSo2, 43 kDa tail protein from Shewanella oneidensis.
rcsb |
| source organism |
Shewanella oneidensis
|
| total genus |
77
|
| structure length |
328
|
| sequence length |
347
|
| chains with identical sequence |
B, C, D, E, F
|
| ec nomenclature | |
| pdb deposition date | 2008-02-26 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF05954 | Phage_GPD | Phage late control gene D protein (GPD) |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Roll | Phage tail proteins - horseshoe like beta roll fold | Baseplate protein-like domain - beta roll fold | ||
| Alpha Beta | 2-Layer Sandwich | Phage tail proteins - 2 layer sandwich fold | Baseplate protein-like domains - 2 layer sandwich fold | ||
| Alpha Beta | 3-Layer(bab) Sandwich | Phage tail protein beta-alpha-beta fold | Baseplate protein-like domains |
#chains in the Genus database with same CATH superfamily 3D37 A; 2P5Z X; 3CDD A; 4MTK A; 4UHV A; 1WRU A; #chains in the Genus database with same CATH topology 3GR5 A; 2W78 A; 2X53 1; 3CDD A; 2A02 A; 4JTM A; 2W6U A; 2L4W A; 2O5P A; 3OV5 A; 4M0N A; 2W75 A; 2W6T A; 3D37 A; 4AR0 A; 4MTK A; 2M5J A; 2W77 A; 3GS9 A; 1K28 D; 1WRU A; 3EZJ A; 2WZP R; 1ZZV A; 2P5Z X; 2W16 A; 2W76 A; 4M0H A; 2IAH A; 2Z6B D; 1WTH D; 2D1U A; 4UHV A; 3ADY A; 4G08 A; #chains in the Genus database with same CATH homology 3D37 A; 2P5Z X; 3CDD A; 4MTK A; 4UHV A; 1WRU A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
