3N78A

Sgrai bound to secondary site dna and mg(ii)
Total Genus 105
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
105
sequence length
338
structure length
336
Chain Sequence
PFTYSIEATRNLATTERCIQDIRNAPVRNRSTQFQLAQQNMLAYTFGEVIPGFASAGINGMDYRDVIGRPVENAVTEGTHFFRDDFRVDSNAKAKVAGDIFEIVSSAVMWNCAARWNSLMVGEGWRSQPRYSRPTLSPSPRRQVAVLNLPRSFDWVSLLVPESQEVIEEFRAGLRKDGLGLPTSTPDLAVVVLPEEFQNDEMWREEIAGLTRPNQILLSGAYQRLQGRVQPGEISLAVAFKRSLRSDRLYQPLYEANVMQLLLEGKLGAPKVEFEVHTLAPEGTNAFVTYEAASLYGLARSAVHRAIRELYVPPTAADLARRFFAFLNERMELVNG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase/dna
molecule keywords SgraIR restriction enzyme
publication title New clues in the allosteric activation of DNA cleavage by SgrAI: structures of SgrAI bound to cleaved primary-site DNA and uncleaved secondary-site DNA.
pubmed doi rcsb
source organism Streptomyces griseus
total genus 105
structure length 336
sequence length 338
chains with identical sequence B
ec nomenclature ec 3.1.21.4: Type II site-specific deoxyribonuclease.
pdb deposition date 2010-05-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF07832 Bse634I Cfr10I/Bse634I restriction endonuclease
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.91.10 Alpha Beta 3-Layer(aba) Sandwich Restriction Endonuclease Restriction Endonuclease 3n78A00
3N78A 3MQYA 1KNVA 1CFRA 3MQ6A 3V20A 3DPGA 3V21A 3DVOA 3DW9A 3N7BA 3V1ZA 1DC1A
chains in the Genus database with same CATH superfamily
5CGVA 5DBSA 4AWKA 5D42A 3DVOA 2FOKA 4AVQA 5JHTA 2FQZA 4AVLA 4E5JA 3V1ZA 1KNVA 5JHVA 3DW9A 2E52A 1DC1A 2BAMA 2XI7A 3A4KA 1CFRA 3V21A 4CHCA 5CL0A 4E5FA 2GB7A 2PFJA 1FZRA 1SDOA 4YYLA 3N7BA 1ES8A 4R28A 4CGSA 1BHMA 3WVGA 2P0JA 5FDDA 1VRRA 4E5EA 3WVPA 3MQYA 1DFMA 3ODHA 5CZNA 4NFZA 4F0PA 1FOKA 4ZI0A 1M0DA 3WVKA 4E5LA 1ESGA 3WVIA 3CAEA 3WVHA 3HW4A 3BM3A 1BAMA 4AWGA 5D2OA 3V20A 4ZHZA 4AWFA 2EWFA 3EBJA 5DESA 4OC8A 4AWMA 4E5IA 5D8UA 5D4GA 3HW3A 5DEBA 4E5HA 3BAMA 2XI5A 4AVGA 5EGAA 5I13A 3HW5A 4CGXA 1D2IA 5CCYA 4AWHA 3N78A 4ZQQA 4E5GA 3HW6A 3MQ6A 5FDGA 2P14A 4F0QA 5D9JA 1M0IA 3DPGA
chains in the Genus database with same CATH topology
5CGVA 5DBSA 4AWKA 5D42A 3DVOA 2FOKA 4AVQA 5JHTA 2FQZA 4AVLA 4E5JA 3V1ZA 1KNVA 5JHVA 3DW9A 2E52A 1DC1A 2BAMA 2XI7A 3A4KA 1CFRA 3V21A 4CHCA 5CL0A 4E5FA 2GB7A 2PFJA 1FZRA 1SDOA 4YYLA 3N7BA 1ES8A 4R28A 4CGSA 1BHMA 3WVGA 2P0JA 5FDDA 1VRRA 4E5EA 3WVPA 3MQYA 1DFMA 3ODHA 5CZNA 4NFZA 4F0PA 1FOKA 4ZI0A 1M0DA 3WVKA 4E5LA 1ESGA 3WVIA 3CAEA 3WVHA 3HW4A 3BM3A 1BAMA 4AWGA 5D2OA 3V20A 4ZHZA 4AWFA 2EWFA 3EBJA 5DESA 4OC8A 4AWMA 4E5IA 5D8UA 5D4GA 3HW3A 5DEBA 4E5HA 3BAMA 2XI5A 4AVGA 5EGAA 5I13A 3HW5A 4CGXA 1D2IA 5CCYA 4AWHA 3N78A 4ZQQA 4E5GA 3HW6A 3MQ6A 5FDGA 2P14A 4F0QA 5D9JA 1M0IA 3DPGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3N78 A;  3MQY A;  1KNV A;  1CFR A;  3MQ6 A;  3V20 A;  3DPG A;  3V21 A;  3DVO A;  3DW9 A;  3N7B A;  3V1Z A;  1DC1 A; 
#chains in the Genus database with same CATH topology
 5CGV A;  5DBS A;  4AWK A;  5D42 A;  3DVO A;  2FOK A;  4AVQ A;  5JHT A;  2FQZ A;  4AVL A;  4E5J A;  3V1Z A;  1KNV A;  5JHV A;  3DW9 A;  2E52 A;  1DC1 A;  2BAM A;  2XI7 A;  3A4K A;  1CFR A;  3V21 A;  4CHC A;  5CL0 A;  4E5F A;  2GB7 A;  2PFJ A;  1FZR A;  1SDO A;  4YYL A;  3N7B A;  1ES8 A;  4R28 A;  4CGS A;  1BHM A;  3WVG A;  2P0J A;  5FDD A;  1VRR A;  4E5E A;  3WVP A;  3MQY A;  1DFM A;  3ODH A;  5CZN A;  4NFZ A;  4F0P A;  1FOK A;  4ZI0 A;  1M0D A;  3WVK A;  4E5L A;  1ESG A;  3WVI A;  3CAE A;  3WVH A;  3HW4 A;  3BM3 A;  1BAM A;  4AWG A;  5D2O A;  3V20 A;  4ZHZ A;  4AWF A;  2EWF A;  3EBJ A;  5DES A;  4OC8 A;  4AWM A;  4E5I A;  5D8U A;  5D4G A;  3HW3 A;  5DEB A;  4E5H A;  3BAM A;  2XI5 A;  4AVG A;  5EGA A;  5I13 A;  3HW5 A;  4CGX A;  1D2I A;  5CCY A;  4AWH A;  3N78 A;  4ZQQ A;  4E5G A;  3HW6 A;  3MQ6 A;  5FDG A;  2P14 A;  4F0Q A;  5D9J A;  1M0I A;  3DPG A; 
#chains in the Genus database with same CATH homology
 5CGV A;  5DBS A;  4AWK A;  5D42 A;  3DVO A;  2FOK A;  4AVQ A;  5JHT A;  2FQZ A;  4AVL A;  4E5J A;  3V1Z A;  1KNV A;  5JHV A;  3DW9 A;  2E52 A;  1DC1 A;  2BAM A;  2XI7 A;  3A4K A;  1CFR A;  3V21 A;  4CHC A;  5CL0 A;  4E5F A;  2GB7 A;  2PFJ A;  1FZR A;  1SDO A;  4YYL A;  3N7B A;  1ES8 A;  4R28 A;  4CGS A;  1BHM A;  3WVG A;  2P0J A;  5FDD A;  1VRR A;  4E5E A;  3WVP A;  3MQY A;  1DFM A;  3ODH A;  5CZN A;  4NFZ A;  4F0P A;  1FOK A;  4ZI0 A;  1M0D A;  3WVK A;  4E5L A;  1ESG A;  3WVI A;  3CAE A;  3WVH A;  3HW4 A;  3BM3 A;  1BAM A;  4AWG A;  5D2O A;  3V20 A;  4ZHZ A;  4AWF A;  2EWF A;  3EBJ A;  5DES A;  4OC8 A;  4AWM A;  4E5I A;  5D8U A;  5D4G A;  3HW3 A;  5DEB A;  4E5H A;  3BAM A;  2XI5 A;  4AVG A;  5EGA A;  5I13 A;  3HW5 A;  4CGX A;  1D2I A;  5CCY A;  4AWH A;  3N78 A;  4ZQQ A;  4E5G A;  3HW6 A;  3MQ6 A;  5FDG A;  2P14 A;  4F0Q A;  5D9J A;  1M0I A;  3DPG A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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