The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
139
|
sequence length |
418
|
structure length |
418
|
Chain Sequence |
MTLVEKILSKKVGYEVCAGDSIEVEVDLAMTHDGTTPLAYKALKEMSDSVWNPDKIVVAFDHNVPPNTVKAAEMQKLALEFVKRFGIKNFHKGGEGICHQILAENYVLPNMFVAGGDSHTCTHGAFGAFATGFGATDMAYIYATGETWIKVPKTIRVDIVGKNENVSAKDIVLRVCKEIGRRGATYMAIEYGGEVVKNMDMDGRLTLCNMAIEMGGKTGVIEADEITYDYLKKERGLSDEDIAKLKKERITVNRDEANYYKEIEIDITDMEEQVAVPHHPDNVKPISDVEGTEINQVFIGSCTNGRLSDLREAAKYLKGREVHKDVKLIVIPASKKVFLQALKEGIIDIFVKAGAMICTPGCGPCLGAHQGVLAEGEICLSTTNRNFKGRMGHINSYIYLASPKIAAISAVKGYITNK
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Lyase
|
| molecule keywords |
Homoaconitase large subunit
|
| publication title |
Structural characterization and comparison of the large subunits of IPM isomerase and homoaconitase from Methanococcus jannaschii
pubmed doi rcsb |
| source organism |
Methanocaldococcus jannaschii
|
| total genus |
139
|
| structure length |
418
|
| sequence length |
418
|
| chains with identical sequence |
B
|
| ec nomenclature |
ec
4.2.1.114: Methanogen homoaconitase. |
| pdb deposition date | 2013-05-13 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00330 | Aconitase | Aconitase family (aconitate hydratase) |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | Aconitase; domain 3 | Aconitase, domain 3 | ||
| Alpha Beta | 2-Layer Sandwich | Aconitase; domain 3 | Aconitase; domain 3 |
#chains in the Genus database with same CATH superfamily 1AMJ A; 1B0J A; 1NIS A; 1C96 A; 3SNP A; 2B3X A; 4KP2 A; 1B0M A; 4NQY A; 3SN2 A; 1AMI A; 1ACO A; 7ACN A; 1FGH A; 4KP1 A; 5ACN A; 2B3Y A; 6ACN A; 1L5J A; 1NIT A; 1C97 A; 1B0K A; 8ACN A; #chains in the Genus database with same CATH topology 1AMJ A; 1B0J A; 1NIS A; 1C96 A; 3SNP A; 2B3X A; 4KP2 A; 1B0M A; 4NQY A; 3SN2 A; 1AMI A; 1ACO A; 7ACN A; 1FGH A; 4KP1 A; 5ACN A; 2B3Y A; 6ACN A; 1L5J A; 1NIT A; 1C97 A; 1B0K A; 8ACN A; #chains in the Genus database with same CATH homology 1AMJ A; 1B0J A; 1NIS A; 1C96 A; 3SNP A; 2B3X A; 4KP2 A; 1B0M A; 4NQY A; 3SN2 A; 1AMI A; 1ACO A; 7ACN A; 1FGH A; 4KP1 A; 5ACN A; 2B3Y A; 6ACN A; 1L5J A; 1NIT A; 1C97 A; 1B0K A; 8ACN A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
