4YEWA

Huab-19bp
Total Genus 20
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
20
sequence length
90
structure length
71
Chain Sequence
MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKEAKVPSFRAGKALKDAVN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Dna binding protein/dna
molecule keywords DNA-binding protein HU-beta
publication title HU multimerization shift controls nucleoid compaction.
pubmed doi rcsb
source organism Escherichia coli
total genus 20
structure length 71
sequence length 90
ec nomenclature
pdb deposition date 2015-02-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00216 Bac_DNA_binding Bacterial DNA-binding protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.520.10 Few Secondary Structures Irregular HU Protein; Chain A IHF-like DNA-binding proteins 4yewA00
5EKAA 1OWFA 2HT0A 5FBMA 1P51A 1EXEA 2O97A 1MULA 4YFHA 1IHFB 1OUZA 1RIYA 1OWFB 2HT0B 2NP2A 4DKYA 2O97B 1HUUA 1P71A 1OUZB 4PT4A 2IIEA 4N1VA 1OWGA 4YEWA 5L8ZA 1B8ZA 4YFTA 1P78A 4QJNA 1HUEA 4YEWC 3RHIA 4QJUA 4YFTC 1OWGB 2IIFA 4FMRA 4YEXA 4YF0A 1IHFA 4P3VA 4YEYA 2NDPA 1WTUA
chains in the Genus database with same CATH superfamily
5EKAA 1OWFA 2HT0A 5FBMA 1P51A 1EXEA 2O97A 1MULA 4YFHA 1IHFB 1OUZA 1RIYA 1OWFB 2HT0B 2NP2A 4DKYA 2O97B 1HUUA 1P71A 1OUZB 4PT4A 2IIEA 4N1VA 1OWGA 4YEWA 5L8ZA 1B8ZA 4YFTA 1P78A 4QJNA 1HUEA 4YEWC 3RHIA 4QJUA 4YFTC 1OWGB 2IIFA 4FMRA 4YEXA 4YF0A 1IHFA 4P3VA 4YEYA 2NDPA 1WTUA
chains in the Genus database with same CATH topology
5EKAA 1OWFA 2HT0A 5FBMA 1P51A 1EXEA 2O97A 1MULA 4YFHA 1IHFB 1OUZA 1RIYA 1OWFB 2HT0B 2NP2A 4DKYA 2O97B 1HUUA 1P71A 1OUZB 4PT4A 2IIEA 4N1VA 1OWGA 4YEWA 5L8ZA 1B8ZA 4YFTA 1P78A 4QJNA 1HUEA 4YEWC 3RHIA 4QJUA 4YFTC 1OWGB 2IIFA 4FMRA 4YEXA 4YF0A 1IHFA 4P3VA 4YEYA 2NDPA 1WTUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5EKA A;  1OWF A;  2HT0 A;  5FBM A;  1P51 A;  1EXE A;  2O97 A;  1MUL A;  4YFH A;  1IHF B;  1OUZ A;  1RIY A;  1OWF B;  2HT0 B;  2NP2 A;  4DKY A;  2O97 B;  1HUU A;  1P71 A;  1OUZ B;  4PT4 A;  2IIE A;  4N1V A;  1OWG A;  4YEW A;  5L8Z A;  1B8Z A;  4YFT A;  1P78 A;  4QJN A;  1HUE A;  4YEW C;  3RHI A;  4QJU A;  4YFT C;  1OWG B;  2IIF A;  4FMR A;  4YEX A;  4YF0 A;  1IHF A;  4P3V A;  4YEY A;  2NDP A;  1WTU A; 
#chains in the Genus database with same CATH topology
 5EKA A;  1OWF A;  2HT0 A;  5FBM A;  1P51 A;  1EXE A;  2O97 A;  1MUL A;  4YFH A;  1IHF B;  1OUZ A;  1RIY A;  1OWF B;  2HT0 B;  2NP2 A;  4DKY A;  2O97 B;  1HUU A;  1P71 A;  1OUZ B;  4PT4 A;  2IIE A;  4N1V A;  1OWG A;  4YEW A;  5L8Z A;  1B8Z A;  4YFT A;  1P78 A;  4QJN A;  1HUE A;  4YEW C;  3RHI A;  4QJU A;  4YFT C;  1OWG B;  2IIF A;  4FMR A;  4YEX A;  4YF0 A;  1IHF A;  4P3V A;  4YEY A;  2NDP A;  1WTU A; 
#chains in the Genus database with same CATH homology
 5EKA A;  1OWF A;  2HT0 A;  5FBM A;  1P51 A;  1EXE A;  2O97 A;  1MUL A;  4YFH A;  1IHF B;  1OUZ A;  1RIY A;  1OWF B;  2HT0 B;  2NP2 A;  4DKY A;  2O97 B;  1HUU A;  1P71 A;  1OUZ B;  4PT4 A;  2IIE A;  4N1V A;  1OWG A;  4YEW A;  5L8Z A;  1B8Z A;  4YFT A;  1P78 A;  4QJN A;  1HUE A;  4YEW C;  3RHI A;  4QJU A;  4YFT C;  1OWG B;  2IIF A;  4FMR A;  4YEX A;  4YF0 A;  1IHF A;  4P3V A;  4YEY A;  2NDP A;  1WTU A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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