4KSZA

Crystal structure of bovine lactoperoxidase complexed with cystiene at 1.98a resolution
Total Genus 188
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
188
sequence length
595
structure length
594
Chain Sequence
SWEVGCGAPVPLVKCDENSPYRTITGDCNNRRSPALGAANRALARWLPAEYEDGLALPFGWTQRKTRNGFRVPLAREVSNKIVGYLDEEGVLDQNRSLLFMQWGQIVDHDLDFAPETELGSNEHSKTQCEEYCIQGDNCFPIMFPKNDPKLKTQGKCMPFFRAGFVCPTPPYQSLAREQINAVTSFLDASLVYGSEPLASRLRNLSSPLGLMAVNQEAWDHGLAYLPFNNKKPSPCEFINTTARVPCFLAGDFRASEQILLATAHTLLLREHNRLARELKKLNPHWNGEKLYQEARKILGAFIQIITFRDYLPIVLGSEMQKWIPPYQGYNNSVDPRISNVFTFAFRFGHMEVPSTVSRLDENYQPWGPEAELPLHTLFFNTWRIIKDGGIDPLVRGLLAKKSKLMNQDKMVTSELRNKLFQPTHKIHGFDLAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQTVLKNKILAKKLMDLYKTPDNIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDGDRFWWENPGVFTEKQRDSLQKVSFSRLICDNTHITKVPLHAFQANNYPHDFVDCSTVDKLDLSPWASREN
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
molecule tags Oxidoreductase
molecule keywords Lactoperoxidase
publication title Crystal structure of bovine lactoperoxidase complexed with cystiene at 1.98A resolution
rcsb
total genus 188
structure length 594
sequence length 595
ec nomenclature ec 1.11.1.7: Peroxidase.
pdb deposition date 2013-05-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03098 An_peroxidase Animal haem peroxidase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.640.10 Mainly Alpha Orthogonal Bundle Myeloperoxidase, subunit C Haem peroxidase domain superfamily, animal type 4kszA00
1DNWC 4QJQA 4OTYA 4OTJA 3QMOA 5IKTA 5F1AA 3NTGA 3N8YB 1D2VC 2IPSA 3Q9KA 3S4FA 5GLSA 5HPWA 3NAKA 4NT3A 2OYEP 3BXIA 4PH9A 1DDXA 3NIUA 4KVLA 2QPKA 1EQHA 4QYQA 3SXVA 4OEKA 4M10A 4MSFA 2AYLA 2R5LA 3HS5A 1CX2A 4FM5A 3N8YA 3PGHA 3N8VA 4RS0A 3HS6A 1HT5A 1IGZA 3NTBA 3R5QA 5IKRA 1EQGA 4RUTA 3UBAA 3ZS1C 3GCKA 4COXA 3Q7DA 3RR3A 3NT1A 3V6QA 4KVJA 4GM7A 5FDQA 1PRHA 2GJMA 4GN6A 3HS7A 2IKCA 3OLUA 1D5LC 3R55A 1PTHA 2O86A 2OJVA 2QRBA 5COXA 1MHLC 3GC1A 3QF1A 1DNUC 3NYHA 3QL6A 1PGEA 3PY4A 2OYUP 3TZIA 3KRQA 3QH0A 4Y55A 4IG5A 3LN1A 4NJBA 5F19A 2NQXA 4E1GA 5JW1A 3ERHA 3TGYA 1HT8A 4KVKA 3N8ZA 1CVUA 2PUMA 4O1ZA 3R5OA 3OGWA 5B72A 3I6NA 5IKVA 3F9PC 2Z5ZA 4RRYA 6COXA 3OLTA 2EHAA 3KK6A 5IKQA 1MYPC 3MDLA 3MQEA 4RRWA 2PT3A 4HHSA 5KIRA 3ERIA 4PNXA 1DIYA 1U67A 5JVYA 4RRZA 4Z0LA 4DL1C 1D7WC 2QQTA 4M11A 1FE2A 5FIWC 3R4XA 4RRXA 3FNLA 3LN0A 3N8FA 1CXPC 3GCJA 3RKEA 3N8XA 4KSZA 4HHRA 4LJJA 4C1MC 2E9EA 1IGXA 5GH0A 3N8WA 1CQEA 3GCLA 3KRKA 3ZS0C 5JVZA 1Q4GA 1EBVA 5FF1A 3FAQA 2EFBA 4N7AA 1PXXA 3N8WB
chains in the Genus database with same CATH superfamily
1DNWC 4QJQA 4OTYA 4OTJA 3QMOA 5IKTA 5F1AA 3NTGA 3N8YB 1D2VC 2IPSA 3Q9KA 3S4FA 5GLSA 5HPWA 3NAKA 4NT3A 2OYEP 3BXIA 4PH9A 1DDXA 3NIUA 4KVLA 2QPKA 1EQHA 4QYQA 3SXVA 4OEKA 4M10A 4MSFA 2AYLA 2R5LA 3HS5A 1CX2A 4FM5A 3N8YA 3PGHA 3N8VA 4RS0A 3HS6A 1HT5A 1IGZA 3NTBA 3R5QA 5IKRA 1EQGA 4RUTA 3UBAA 3ZS1C 3GCKA 4COXA 3Q7DA 3RR3A 3NT1A 3V6QA 4KVJA 4GM7A 5FDQA 1PRHA 2GJMA 4GN6A 3HS7A 2IKCA 3OLUA 1D5LC 3R55A 1PTHA 2O86A 2OJVA 2QRBA 5COXA 1MHLC 3GC1A 3QF1A 1DNUC 3NYHA 3QL6A 1PGEA 3PY4A 2OYUP 3TZIA 3KRQA 3QH0A 4Y55A 4IG5A 3LN1A 4NJBA 5F19A 2NQXA 4E1GA 5JW1A 3ERHA 3TGYA 1HT8A 4KVKA 3N8ZA 1CVUA 2PUMA 4O1ZA 3R5OA 3OGWA 5B72A 3I6NA 5IKVA 3F9PC 2Z5ZA 4RRYA 6COXA 3OLTA 2EHAA 3KK6A 5IKQA 1MYPC 3MDLA 3MQEA 4RRWA 2PT3A 4HHSA 5KIRA 3ERIA 4PNXA 1DIYA 1U67A 5JVYA 4RRZA 4Z0LA 4DL1C 1D7WC 2QQTA 4M11A 1FE2A 5FIWC 3R4XA 4RRXA 3FNLA 3LN0A 3N8FA 1CXPC 3GCJA 3RKEA 3N8XA 4KSZA 4HHRA 4LJJA 4C1MC 2E9EA 1IGXA 5GH0A 3N8WA 1CQEA 3GCLA 3KRKA 3ZS0C 5JVZA 1Q4GA 1EBVA 5FF1A 3FAQA 2EFBA 4N7AA 1PXXA 3N8WB
chains in the Genus database with same CATH topology
1DNWC 4QJQA 4OTYA 4OTJA 3QMOA 5IKTA 5F1AA 3NTGA 3N8YB 1D2VC 2IPSA 3Q9KA 3S4FA 5GLSA 5HPWA 3NAKA 4NT3A 2OYEP 3BXIA 4PH9A 1DDXA 3NIUA 4KVLA 2QPKA 1EQHA 4QYQA 3SXVA 4OEKA 4M10A 4MSFA 2AYLA 2R5LA 3HS5A 1CX2A 4FM5A 3N8YA 3PGHA 3N8VA 4RS0A 3HS6A 1HT5A 1IGZA 3NTBA 3R5QA 5IKRA 1EQGA 4RUTA 3UBAA 3ZS1C 3GCKA 4COXA 3Q7DA 3RR3A 3NT1A 3V6QA 4KVJA 4GM7A 5FDQA 1PRHA 2GJMA 4GN6A 3HS7A 2IKCA 3OLUA 1D5LC 3R55A 1PTHA 2O86A 2OJVA 2QRBA 5COXA 1MHLC 3GC1A 3QF1A 1DNUC 3NYHA 3QL6A 1PGEA 3PY4A 2OYUP 3TZIA 3KRQA 3QH0A 4Y55A 4IG5A 3LN1A 4NJBA 5F19A 2NQXA 4E1GA 5JW1A 3ERHA 3TGYA 1HT8A 4KVKA 3N8ZA 1CVUA 2PUMA 4O1ZA 3R5OA 3OGWA 5B72A 3I6NA 5IKVA 3F9PC 2Z5ZA 4RRYA 6COXA 3OLTA 2EHAA 3KK6A 5IKQA 1MYPC 3MDLA 3MQEA 4RRWA 2PT3A 4HHSA 5KIRA 3ERIA 4PNXA 1DIYA 1U67A 5JVYA 4RRZA 4Z0LA 4DL1C 1D7WC 2QQTA 4M11A 1FE2A 5FIWC 3R4XA 4RRXA 3FNLA 3LN0A 3N8FA 1CXPC 3GCJA 3RKEA 3N8XA 4KSZA 4HHRA 4LJJA 4C1MC 2E9EA 1IGXA 5GH0A 3N8WA 1CQEA 3GCLA 3KRKA 3ZS0C 5JVZA 1Q4GA 1EBVA 5FF1A 3FAQA 2EFBA 4N7AA 1PXXA 3N8WB
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 1DNW C;  4QJQ A;  4OTY A;  4OTJ A;  3QMO A;  5IKT A;  5F1A A;  3NTG A;  3N8Y B;  1D2V C;  2IPS A;  3Q9K A;  3S4F A;  5GLS A;  5HPW A;  3NAK A;  4NT3 A;  2OYE P;  3BXI A;  4PH9 A;  1DDX A;  3NIU A;  4KVL A;  2QPK A;  1EQH A;  4QYQ A;  3SXV A;  4OEK A;  4M10 A;  4MSF A;  2AYL A;  2R5L A;  3HS5 A;  1CX2 A;  4FM5 A;  3N8Y A;  3PGH A;  3N8V A;  4RS0 A;  3HS6 A;  1HT5 A;  1IGZ A;  3NTB A;  3R5Q A;  5IKR A;  1EQG A;  4RUT A;  3UBA A;  3ZS1 C;  3GCK A;  4COX A;  3Q7D A;  3RR3 A;  3NT1 A;  3V6Q A;  4KVJ A;  4GM7 A;  5FDQ A;  1PRH A;  2GJM A;  4GN6 A;  3HS7 A;  2IKC A;  3OLU A;  1D5L C;  3R55 A;  1PTH A;  2O86 A;  2OJV A;  2QRB A;  5COX A;  1MHL C;  3GC1 A;  3QF1 A;  1DNU C;  3NYH A;  3QL6 A;  1PGE A;  3PY4 A;  2OYU P;  3TZI A;  3KRQ A;  3QH0 A;  4Y55 A;  4IG5 A;  3LN1 A;  4NJB A;  5F19 A;  2NQX A;  4E1G A;  5JW1 A;  3ERH A;  3TGY A;  1HT8 A;  4KVK A;  3N8Z A;  1CVU A;  2PUM A;  4O1Z A;  3R5O A;  3OGW A;  5B72 A;  3I6N A;  5IKV A;  3F9P C;  2Z5Z A;  4RRY A;  6COX A;  3OLT A;  2EHA A;  3KK6 A;  5IKQ A;  1MYP C;  3MDL A;  3MQE A;  4RRW A;  2PT3 A;  4HHS A;  5KIR A;  3ERI A;  4PNX A;  1DIY A;  1U67 A;  5JVY A;  4RRZ A;  4Z0L A;  4DL1 C;  1D7W C;  2QQT A;  4M11 A;  1FE2 A;  5FIW C;  3R4X A;  4RRX A;  3FNL A;  3LN0 A;  3N8F A;  1CXP C;  3GCJ A;  3RKE A;  3N8X A;  4KSZ A;  4HHR A;  4LJJ A;  4C1M C;  2E9E A;  1IGX A;  5GH0 A;  3N8W A;  1CQE A;  3GCL A;  3KRK A;  3ZS0 C;  5JVZ A;  1Q4G A;  1EBV A;  5FF1 A;  3FAQ A;  2EFB A;  4N7A A;  1PXX A;  3N8W B; 
#chains in the Genus database with same CATH topology
 1DNW C;  4QJQ A;  4OTY A;  4OTJ A;  3QMO A;  5IKT A;  5F1A A;  3NTG A;  3N8Y B;  1D2V C;  2IPS A;  3Q9K A;  3S4F A;  5GLS A;  5HPW A;  3NAK A;  4NT3 A;  2OYE P;  3BXI A;  4PH9 A;  1DDX A;  3NIU A;  4KVL A;  2QPK A;  1EQH A;  4QYQ A;  3SXV A;  4OEK A;  4M10 A;  4MSF A;  2AYL A;  2R5L A;  3HS5 A;  1CX2 A;  4FM5 A;  3N8Y A;  3PGH A;  3N8V A;  4RS0 A;  3HS6 A;  1HT5 A;  1IGZ A;  3NTB A;  3R5Q A;  5IKR A;  1EQG A;  4RUT A;  3UBA A;  3ZS1 C;  3GCK A;  4COX A;  3Q7D A;  3RR3 A;  3NT1 A;  3V6Q A;  4KVJ A;  4GM7 A;  5FDQ A;  1PRH A;  2GJM A;  4GN6 A;  3HS7 A;  2IKC A;  3OLU A;  1D5L C;  3R55 A;  1PTH A;  2O86 A;  2OJV A;  2QRB A;  5COX A;  1MHL C;  3GC1 A;  3QF1 A;  1DNU C;  3NYH A;  3QL6 A;  1PGE A;  3PY4 A;  2OYU P;  3TZI A;  3KRQ A;  3QH0 A;  4Y55 A;  4IG5 A;  3LN1 A;  4NJB A;  5F19 A;  2NQX A;  4E1G A;  5JW1 A;  3ERH A;  3TGY A;  1HT8 A;  4KVK A;  3N8Z A;  1CVU A;  2PUM A;  4O1Z A;  3R5O A;  3OGW A;  5B72 A;  3I6N A;  5IKV A;  3F9P C;  2Z5Z A;  4RRY A;  6COX A;  3OLT A;  2EHA A;  3KK6 A;  5IKQ A;  1MYP C;  3MDL A;  3MQE A;  4RRW A;  2PT3 A;  4HHS A;  5KIR A;  3ERI A;  4PNX A;  1DIY A;  1U67 A;  5JVY A;  4RRZ A;  4Z0L A;  4DL1 C;  1D7W C;  2QQT A;  4M11 A;  1FE2 A;  5FIW C;  3R4X A;  4RRX A;  3FNL A;  3LN0 A;  3N8F A;  1CXP C;  3GCJ A;  3RKE A;  3N8X A;  4KSZ A;  4HHR A;  4LJJ A;  4C1M C;  2E9E A;  1IGX A;  5GH0 A;  3N8W A;  1CQE A;  3GCL A;  3KRK A;  3ZS0 C;  5JVZ A;  1Q4G A;  1EBV A;  5FF1 A;  3FAQ A;  2EFB A;  4N7A A;  1PXX A;  3N8W B; 
#chains in the Genus database with same CATH homology
 1DNW C;  4QJQ A;  4OTY A;  4OTJ A;  3QMO A;  5IKT A;  5F1A A;  3NTG A;  3N8Y B;  1D2V C;  2IPS A;  3Q9K A;  3S4F A;  5GLS A;  5HPW A;  3NAK A;  4NT3 A;  2OYE P;  3BXI A;  4PH9 A;  1DDX A;  3NIU A;  4KVL A;  2QPK A;  1EQH A;  4QYQ A;  3SXV A;  4OEK A;  4M10 A;  4MSF A;  2AYL A;  2R5L A;  3HS5 A;  1CX2 A;  4FM5 A;  3N8Y A;  3PGH A;  3N8V A;  4RS0 A;  3HS6 A;  1HT5 A;  1IGZ A;  3NTB A;  3R5Q A;  5IKR A;  1EQG A;  4RUT A;  3UBA A;  3ZS1 C;  3GCK A;  4COX A;  3Q7D A;  3RR3 A;  3NT1 A;  3V6Q A;  4KVJ A;  4GM7 A;  5FDQ A;  1PRH A;  2GJM A;  4GN6 A;  3HS7 A;  2IKC A;  3OLU A;  1D5L C;  3R55 A;  1PTH A;  2O86 A;  2OJV A;  2QRB A;  5COX A;  1MHL C;  3GC1 A;  3QF1 A;  1DNU C;  3NYH A;  3QL6 A;  1PGE A;  3PY4 A;  2OYU P;  3TZI A;  3KRQ A;  3QH0 A;  4Y55 A;  4IG5 A;  3LN1 A;  4NJB A;  5F19 A;  2NQX A;  4E1G A;  5JW1 A;  3ERH A;  3TGY A;  1HT8 A;  4KVK A;  3N8Z A;  1CVU A;  2PUM A;  4O1Z A;  3R5O A;  3OGW A;  5B72 A;  3I6N A;  5IKV A;  3F9P C;  2Z5Z A;  4RRY A;  6COX A;  3OLT A;  2EHA A;  3KK6 A;  5IKQ A;  1MYP C;  3MDL A;  3MQE A;  4RRW A;  2PT3 A;  4HHS A;  5KIR A;  3ERI A;  4PNX A;  1DIY A;  1U67 A;  5JVY A;  4RRZ A;  4Z0L A;  4DL1 C;  1D7W C;  2QQT A;  4M11 A;  1FE2 A;  5FIW C;  3R4X A;  4RRX A;  3FNL A;  3LN0 A;  3N8F A;  1CXP C;  3GCJ A;  3RKE A;  3N8X A;  4KSZ A;  4HHR A;  4LJJ A;  4C1M C;  2E9E A;  1IGX A;  5GH0 A;  3N8W A;  1CQE A;  3GCL A;  3KRK A;  3ZS0 C;  5JVZ A;  1Q4G A;  1EBV A;  5FF1 A;  3FAQ A;  2EFB A;  4N7A A;  1PXX A;  3N8W B;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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