5JFBA

Crystal structure of the scavenger receptor cysteine-rich domain 5 (srcr5) from porcine cd163
Total Genus 23
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
23
sequence length
104
structure length
104
Chain Sequence
RSPRLVGGDIPCSGRVEVQHGDTWGTVCDSDFSLEAASVLCRELQCGTVVSLLGGAHFGEGSGQIWAEEFQCEGHESHLSLCPVAPRPDGTCSHSRDVGVVCST
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Endocytosis
molecule keywords Scavenger receptor cysteine-rich type 1 protein M130
publication title The Crystal Structure of the Fifth Scavenger Receptor Cysteine-Rich Domain of Porcine CD163 Reveals an Important Residue Involved in Porcine Reproductive and Respiratory Syndrome Virus Infection
pubmed doi rcsb
source organism Sus scrofa
total genus 23
structure length 104
sequence length 104
ec nomenclature
pdb deposition date 2016-04-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00530 SRCR Scavenger receptor cysteine-rich domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.250.10 Alpha Beta Roll Mac-2 Binding Protein SRCR-like domain 5jfbA00
2XRCA 2JOPA 2OTTX 2JP0A 2OYAA 3T2NA 1O5EL 2JA4A 1O5FL 1BY2A 1Z8GA 5JFBA 5CE1A 1P57A 2OY3A
chains in the Genus database with same CATH superfamily
2XRCA 2JOPA 2OTTX 2JP0A 2OYAA 3T2NA 1O5EL 2JA4A 1O5FL 1BY2A 1Z8GA 5JFBA 5CE1A 1P57A 2OY3A
chains in the Genus database with same CATH topology
2XRCA 2JOPA 2OTTX 2JP0A 2OYAA 3T2NA 1O5EL 2JA4A 1O5FL 1BY2A 1Z8GA 5JFBA 5CE1A 1P57A 2OY3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2XRC A;  2JOP A;  2OTT X;  2JP0 A;  2OYA A;  3T2N A;  1O5E L;  2JA4 A;  1O5F L;  1BY2 A;  1Z8G A;  5JFB A;  5CE1 A;  1P57 A;  2OY3 A; 
#chains in the Genus database with same CATH topology
 2XRC A;  2JOP A;  2OTT X;  2JP0 A;  2OYA A;  3T2N A;  1O5E L;  2JA4 A;  1O5F L;  1BY2 A;  1Z8G A;  5JFB A;  5CE1 A;  1P57 A;  2OY3 A; 
#chains in the Genus database with same CATH homology
 2XRC A;  2JOP A;  2OTT X;  2JP0 A;  2OYA A;  3T2N A;  1O5E L;  2JA4 A;  1O5F L;  1BY2 A;  1Z8G A;  5JFB A;  5CE1 A;  1P57 A;  2OY3 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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