The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
37
|
sequence length |
105
|
structure length |
105
|
Chain Sequence |
SEFITVARPYAKAAFDFAVEHQSVERWQDMLAFAAEVTKNEQMAELLSGALAPETLAESFIAVCGEQLDENGQNLIRVMAENGRLNALPDVLEQFIHLRAVSEAT
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Atp synthesis
|
| molecule keywords |
DELTA SUBUNIT OF THE F1F0-ATP SYNTHASE
|
| publication title |
Solution structure of the N-terminal domain of the delta subunit of the E. coli ATPsynthase.
pubmed doi rcsb |
| source organism |
Escherichia coli
|
| total genus |
37
|
| structure length |
105
|
| sequence length |
105
|
| ec nomenclature |
ec
3.6.1.34: Transferred entry: 7.1.2.2. |
| pdb deposition date | 1997-01-29 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | Peroxidase; domain 1 | N-terminal domain of the delta subunit of the F1F0-ATP synthase |
#chains in the Genus database with same CATH superfamily 2BO5 A; 2JMX A; 2A7U B; 1ABV A; 2WSS S; #chains in the Genus database with same CATH topology 1H5G A; 5KQI A; 5CIH A; 1H5E A; 5SYJ A; 5SYL A; 4JM9 A; 4NVD A; 1LY9 A; 4ATJ A; 7CCP A; 4FDQ A; 1FHF A; 1BVA A; 3M2B A; 3M26 A; 3CCX A; 1AEU A; 3R99 A; 4A78 A; 1CCJ A; 4XV6 A; 1STQ A; 5KQ3 A; 1KXM A; 1H5H A; 2X07 A; 2B12 A; 1S73 A; 4C51 A; 5L05 A; 2ATJ A; 4FEF A; 1GWO A; 1YYD A; 5EJT A; 1SJ2 A; 2VNX X; 1ML2 A; 2EUR A; 1IYN A; 2GHK X; 1MKQ A; 4JQM A; 1CCG A; 5KQ2 A; 1H5K A; 4JQJ A; 1DSO A; 1GW2 A; 1U2K A; 3VLM A; 2GHC X; 4USC A; 2V2E A; 4BM1 A; 2ZCA A; 3FMU A; 3CCP A; 4JPT A; 1OAF A; 5SYX A; 4BM2 A; 2EUU A; 2EUP A; 5AOG A; 1SBM A; 5H9E B; 1AC4 A; 1MKR A; 4NVG B; 5SYY A; 3RRW A; 1AEK A; 1QPA A; 1LY8 A; 4A71 A; 5JHZ A; 5SW5 A; 5KSF A; 1KZM A; 4JMV A; 1ZBZ A; 2CCD A; 4JPU A; 1CPD A; 1JDR A; 2ICV A; 2RC1 X; 2AS4 A; 4GED A; 4NVK B; 3UT2 A; 4NVO B; 3ZCG A; 4CZR A; 1GWT A; 5SX6 A; 4JMW A; 1CMQ A; 2YLJ A; 1RYC A; 5SYH A; 1MN2 A; 5CIE A; 5SXS A; 2E39 A; 5KQK A; 3WXO A; 3M8M A; 2E3B A; 4NVC A; 3FJW A; 4NVF A; 2VCS A; 4BM4 A; 4JPL A; 2Y5A A; 1H5M A; 4BLZ A; 4XVA A; 1W4W A; 2GHE X; 3VLI A; 2PCB A; 3E2N A; 5SYK A; 4NVJ B; 3WNU A; 2PCC A; 1CCB A; 2EUN A; 1B82 A; 2JMX A; 1CPE A; 4XV5 A; 2CCA A; 5SXQ A; 4JMB A; 2VCN A; 3M27 A; 1JCI A; 5KQ0 A; 1BES A; 5KSK A; 4JMZ A; 3ZCH A; 4NVB A; 4FCN A; 1CCK A; 5SXR A; 2RC0 X; 1H3J A; 1V0H X; 4CZN A; 5ALA A; 4JM5 A; 2Y6B A; 4H79 A; 3VLL A; 2AS6 A; 5H9F B; 4CZO A; 1A2F A; 3M2F A; 2ZOP A; 3M2C A; 1H5J A; 5ABO A; 2CYP A; 5KQH A; 4FCS A; 1AC8 A; 4NVH B; 1ARP A; 1DS4 A; 3M23 A; 5ABQ A; 5SW4 A; 3M2H A; 4BLY A; 4PAE A; 4JQN A; 1AA4 A; 3ZCY A; 5CCP A; 2AS3 A; 4NVA A; 4CVJ A; 1AEB A; 1SCH A; 1U74 A; 1LYC A; 1U75 A; 1MK8 A; 1LYK A; 2A7U B; 3RIW A; 5SYV A; 4A6Z A; 3E2O A; 3M2A A; 1S6V A; 1MN1 A; 3WA8 A; 4CUO A; 4BLX A; 2RBW X; 4JMT A; 2JTI A; 5JHX A; 5L86 A; 2EUQ A; 3M29 A; 5SX7 A; 1GZA A; 5L02 A; 1DSP A; 4NVE A; 1ARY A; 1MNP A; 4NVL A; 5KQ6 A; 1AEM A; 1GZB A; 1CCL A; 1HSR A; 1CCA A; 2GB8 A; 4C50 A; 4JMA A; 1AEV A; 1ARV A; 2EUT A; 1H5A A; 5SX3 A; 4NVN B; 1H5L A; 1GX2 A; 3R98 A; 2V23 A; 4BM0 A; 1B80 A; 2XJ8 A; 4JMS A; 1GWU A; 1PA2 A; 2GHD X; 1Z53 A; 5AMM A; 1CPF A; 5ABN A; 3FM4 A; 1H57 A; 1ARU A; 2XIL A; 2BO5 A; 1CMP A; 5CID A; 1BEJ A; 3ATJ A; 4A5G A; 2RBZ X; 1YZR A; 4BLK A; 2RBV X; 2EUO A; 3M28 A; 2AQD A; 2RBY X; 5JQR A; 1CYF A; 1BEP A; 3FM1 A; 1H58 A; 1U2J A; 2VKA A; 3X1L F; 3UW8 A; 3VLK A; 4JB4 A; 4NFG A; 2XJ6 A; 5D6M A; 1AEQ A; 4XV7 A; 1DCC A; 3M2I A; 4JQK A; 1CCE A; 2VO2 X; 4CCP A; 1DSG A; 2XIH A; 1AEG A; 5CIC A; 4OQ7 A; 3VLJ A; 1ARX A; 4BM3 A; 5AL9 A; 2W23 A; 5SXW A; 1DJ1 A; 5CIG A; 2XIF A; 2WSS S; 5SYI A; 2N18 A; 1CMU A; 2E3A A; 3M2D A; 1BEK A; 2RC2 X; 1SDQ A; 3VLH A; 4P4Q A; 5SX2 A; 4CCX A; 4NVI B; 1H5D A; 1ZBY A; 3M2E A; 1YYG A; 3FKG A; 4H7A A; 2GHH X; 6CCP A; 2IA8 A; 5FNE A; 4G05 A; 5CJH A; 3M2G A; 2RBU X; 1H5C A; 4A7M A; 2EUS A; 5JPR A; 1KOK A; 2X08 A; 1H5I A; 4CZP A; 1CCI A; 2XJ5 A; 3M25 A; 1EBE A; 1BGP A; 2B0Z A; 4U7U B; 5SXX A; 5EJX A; 1KRJ A; 2CL4 X; 3EXB A; 1QGJ A; 3M5Q A; 2GGN X; 1U2L A; 1QO4 A; 1ITK A; 4JM8 A; 1KXN A; 4CVI A; 2OEB A; 1LGA A; 1CMT A; 5SX0 B; 1AEE A; 5CD4 J; 1AEO A; 1YZP A; 3RIV A; 5FNB A; 7ATJ A; 1B85 A; 5JHY A; 1A2G A; 4JN0 A; 1H55 A; 1BJ9 A; 1AES A; 1LLP A; 2AS1 A; 5CIF A; 1APX A; 2YCG A; 4CZQ A; 1ATJ A; 2B10 A; 2ANZ A; 2AS2 A; 3X16 A; 1AEJ A; 2XI6 A; 4XV8 A; 2RBX X; 1HCH A; 1CCP A; 2WD4 A; 1ABV A; 1BEQ A; 1AEN A; 5SW6 A; 3FM6 A; 5SX1 A; 5SYU A; 1OAG A; 1SOG A; 1ARW A; 2VNZ X; 4JZA A; 2VCF X; 4GKF A; 5SYW A; 2CEP A; 4XV4 A; 6ATJ A; 1W4Y A; 5SXT A; 4NVM B; 1CCC A; 2RBT X; 3HDL A; 2BOQ A; 1AED A; 1AET A; 1DJ5 A; 4JM6 A; 1H5F A; 5CIB A; 4BLN A; 1AEH A; 1CK6 A; 1DSE A; 1CPG A; 1C8I A; 2CCP A; 1AEF A; 1UB2 A; 5SX0 A; 3Q3U A; 2B11 A; 2Y6A A; 4BLL A; 1BEM A; 2BCN A; 4QYZ B; #chains in the Genus database with same CATH homology 2BO5 A; 2JMX A; 2A7U B; 1ABV A; 2WSS S;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
