1V9HA

Crystal structure of the rnase mc1 mutant y101a in complex with 5'-ump
Total Genus 60
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
60
sequence length
193
structure length
193
Chain Sequence
YVEFDSFWFVQQWPPAVCSFQKSGSCPGSGLRTFTIHGLWPQQSGTSLTNCPGSPFDITKISHLQSQLNTLWPNVLRANNQQFWSHEWTKHGTCSESTFNQAAAFKLAVDMRNNYDIIGALRPHAAGPNGRTKSRQAIKGFLKAKFGKFPGLRCRTDPQTKVSYLVEVVACFAQDGSTLIDCTRDTCGANFIF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Ribonuclease MC
publication title Amino acids conserved at the C-terminal half of the ribonuclease t2 family contribute to protein stability of the enzymes
pubmed doi rcsb
source organism Momordica charantia
total genus 60
structure length 193
sequence length 193
ec nomenclature ec 3.1.27.1: Transferred entry: 4.6.1.19.
pdb deposition date 2004-01-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00445 Ribonuclease_T2 Ribonuclease T2 family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.730.10 Alpha Beta Alpha-Beta Complex Ribonuclease Rh; Chain A Ribonuclease T2-like 1v9hA00
2PQYA 4DW4A 1IQQA 1VD3A 1SGLA 1J1GA 4DW7A 4DVNA 2PQXA 4DW3A 1VCZA 4DVKA 1IOOA 1BOLA 1JY5A 2Z70A 3D3ZA 1DIXA 4DVLA 1VD1A 4DW5A 1J1FA 2EA1A 1UCDA 1BK7A 4DWCA 4DWAA 3TBJA 1V9HA 1UCGA 3T0OA 1IYBA 1UCAA 1UCCA
chains in the Genus database with same CATH superfamily
2PQYA 4DW4A 1IQQA 1VD3A 1SGLA 1J1GA 4DW7A 4DVNA 2PQXA 4DW3A 1VCZA 4DVKA 1IOOA 1BOLA 1JY5A 2Z70A 3D3ZA 1DIXA 4DVLA 1VD1A 4DW5A 1J1FA 2EA1A 1UCDA 1BK7A 4DWCA 4DWAA 3TBJA 1V9HA 1UCGA 3T0OA 1IYBA 1UCAA 1UCCA
chains in the Genus database with same CATH topology
2PQYA 4DW4A 1IQQA 1VD3A 1SGLA 1J1GA 4DW7A 4DVNA 2PQXA 4DW3A 1VCZA 4DVKA 1IOOA 1BOLA 1JY5A 2Z70A 3D3ZA 1DIXA 4DVLA 1VD1A 4DW5A 1J1FA 2EA1A 1UCDA 1BK7A 4DWCA 4DWAA 3TBJA 1V9HA 1UCGA 3T0OA 1IYBA 1UCAA 1UCCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2PQY A;  4DW4 A;  1IQQ A;  1VD3 A;  1SGL A;  1J1G A;  4DW7 A;  4DVN A;  2PQX A;  4DW3 A;  1VCZ A;  4DVK A;  1IOO A;  1BOL A;  1JY5 A;  2Z70 A;  3D3Z A;  1DIX A;  4DVL A;  1VD1 A;  4DW5 A;  1J1F A;  2EA1 A;  1UCD A;  1BK7 A;  4DWC A;  4DWA A;  3TBJ A;  1V9H A;  1UCG A;  3T0O A;  1IYB A;  1UCA A;  1UCC A; 
#chains in the Genus database with same CATH topology
 2PQY A;  4DW4 A;  1IQQ A;  1VD3 A;  1SGL A;  1J1G A;  4DW7 A;  4DVN A;  2PQX A;  4DW3 A;  1VCZ A;  4DVK A;  1IOO A;  1BOL A;  1JY5 A;  2Z70 A;  3D3Z A;  1DIX A;  4DVL A;  1VD1 A;  4DW5 A;  1J1F A;  2EA1 A;  1UCD A;  1BK7 A;  4DWC A;  4DWA A;  3TBJ A;  1V9H A;  1UCG A;  3T0O A;  1IYB A;  1UCA A;  1UCC A; 
#chains in the Genus database with same CATH homology
 2PQY A;  4DW4 A;  1IQQ A;  1VD3 A;  1SGL A;  1J1G A;  4DW7 A;  4DVN A;  2PQX A;  4DW3 A;  1VCZ A;  4DVK A;  1IOO A;  1BOL A;  1JY5 A;  2Z70 A;  3D3Z A;  1DIX A;  4DVL A;  1VD1 A;  4DW5 A;  1J1F A;  2EA1 A;  1UCD A;  1BK7 A;  4DWC A;  4DWA A;  3TBJ A;  1V9H A;  1UCG A;  3T0O A;  1IYB A;  1UCA A;  1UCC A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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