1XPIA

Crystal structure of the catalytic domain of e. coli pseudouridine synthase rluc
Total Genus 71
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
71
sequence length
231
structure length
229
Chain Sequence
AALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRCLQKLRNAR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
molecule keywords Ribosomal large subunit pseudouridine synthase C
publication title Possible RNA binding domains of RluC and RluD
rcsb
source organism Escherichia coli
total genus 71
structure length 229
sequence length 231
chains with identical sequence B
ec nomenclature ec 5.4.99.24: 23S rRNA pseudouridine(955/2504/2580) synthase.
pdb deposition date 2004-10-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00849 PseudoU_synth_2 RNA pseudouridylate synthase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.2350.10 Alpha Beta 2-Layer Sandwich Pseudouridine synthase Pseudouridine synthase 1xpiA00
4LGTA 2HVYA 3LWVA 3HJWA 3U28A 3LWOA 2APOA 1ZE1A 2EY4A 3UAIA 4LABA 1V9KA 2I82A 1R3EA 1ZL3A 1QYUA 1KSVA 2AB4A 1KSKA 2RFKA 3HJYA 3LWQA 3DH3A 1XPIA 2ISTA 2AUSA 1SGVA 1V9FA 3MQKA 1ZE2A 3LWRA 3HAXA 1K8WA 3LWPA 1R3FA 1KSLA 1PRZA
chains in the Genus database with same CATH superfamily
1SI7A 4LGTA 2HVYA 3LWVA 3HJWA 3U28A 3LWOA 2APOA 1Z2ZA 1ZE1A 2EY4A 3UAIA 4LABA 1SZWA 1V9KA 2I82A 1R3EA 1ZL3A 1QYUA 1KSVA 2AB4A 1KSKA 2RFKA 3HJYA 3LWQA 3DH3A 1XPIA 2ISTA 2AUSA 1SGVA 1V9FA 3MQKA 1ZE2A 3LWRA 3HAXA 1K8WA 3LWPA 1R3FA 1KSLA 1PRZA 1SB7A
chains in the Genus database with same CATH topology
1SI7A 4LGTA 2HVYA 3LWVA 3HJWA 3U28A 3LWOA 2APOA 1Z2ZA 1ZE1A 2EY4A 3UAIA 4LABA 1SZWA 1V9KA 2I82A 1R3EA 1ZL3A 1QYUA 1KSVA 2AB4A 1KSKA 2RFKA 3HJYA 3LWQA 3DH3A 1XPIA 2ISTA 2AUSA 1SGVA 1V9FA 3MQKA 1ZE2A 3LWRA 3HAXA 1K8WA 3LWPA 1R3FA 1KSLA 1PRZA 1SB7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4LGT A;  2HVY A;  3LWV A;  3HJW A;  3U28 A;  3LWO A;  2APO A;  1ZE1 A;  2EY4 A;  3UAI A;  4LAB A;  1V9K A;  2I82 A;  1R3E A;  1ZL3 A;  1QYU A;  1KSV A;  2AB4 A;  1KSK A;  2RFK A;  3HJY A;  3LWQ A;  3DH3 A;  1XPI A;  2IST A;  2AUS A;  1SGV A;  1V9F A;  3MQK A;  1ZE2 A;  3LWR A;  3HAX A;  1K8W A;  3LWP A;  1R3F A;  1KSL A;  1PRZ A; 
#chains in the Genus database with same CATH topology
 1SI7 A;  4LGT A;  2HVY A;  3LWV A;  3HJW A;  3U28 A;  3LWO A;  2APO A;  1Z2Z A;  1ZE1 A;  2EY4 A;  3UAI A;  4LAB A;  1SZW A;  1V9K A;  2I82 A;  1R3E A;  1ZL3 A;  1QYU A;  1KSV A;  2AB4 A;  1KSK A;  2RFK A;  3HJY A;  3LWQ A;  3DH3 A;  1XPI A;  2IST A;  2AUS A;  1SGV A;  1V9F A;  3MQK A;  1ZE2 A;  3LWR A;  3HAX A;  1K8W A;  3LWP A;  1R3F A;  1KSL A;  1PRZ A;  1SB7 A; 
#chains in the Genus database with same CATH homology
 1SI7 A;  4LGT A;  2HVY A;  3LWV A;  3HJW A;  3U28 A;  3LWO A;  2APO A;  1Z2Z A;  1ZE1 A;  2EY4 A;  3UAI A;  4LAB A;  1SZW A;  1V9K A;  2I82 A;  1R3E A;  1ZL3 A;  1QYU A;  1KSV A;  2AB4 A;  1KSK A;  2RFK A;  3HJY A;  3LWQ A;  3DH3 A;  1XPI A;  2IST A;  2AUS A;  1SGV A;  1V9F A;  3MQK A;  1ZE2 A;  3LWR A;  3HAX A;  1K8W A;  3LWP A;  1R3F A;  1KSL A;  1PRZ A;  1SB7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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