2BLRA

Thaumatin before a high dose x-ray "burn"
Total Genus 51
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
51
sequence length
206
structure length
206
Chain Sequence
ATFEIVNRCSYTVWAAASKGDAALDAGGRQLNSGESWTINVEPGTNGGKIWARTDCYFDDSGSGICKTGDCGGLLRCKRFGRPPTTLAEFSLNQYGKDYIDISNIKGFNVPMNFSPTTRGCRGVRCAADIVGQCPAKLKAPGGGCNDACTVFQTSEYCCTTGKCGPTEYSRFFKRLCPDAFSYVLDKPTTVTCPGSSNYRVTFCPT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
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molecule tags Plant protein
molecule keywords THAUMATIN I
publication title Improving Radiation-Damage Substructures for Rip.
pubmed doi rcsb
total genus 51
structure length 206
sequence length 206
ec nomenclature
pdb deposition date 2005-03-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00314 Thaumatin Thaumatin family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.110.10 Mainly Beta Sandwich Thaumatin Thaumatin 2blrA00
4EKTA 3VCKA 3GD9A 4C3CA 3V7VA 4EK0A 5KVWA 4L5HA 3X3RA 3VCHA 2OQNA 1LR3A 1RQWA 4DIYA 2VU7A 4MBTA 3DZRA 3DZPA 3X3TA 4DJ1A 2VHKA 4ELAA 5KVZA 3AOKA 1AUNA 2VI4A 5AMZA 4EKAA 4AXUA 1Z3QA 5KVXA 2VU6A 4EKHA 1PCVA 5T3GA 3X3SA 4EKOA 5KW3A 2VI1A 5KW7A 3X3PA 2BLRA 1THWA 1THUA 5LMHA 4BCTA 3GD0A 4BALA 4DJ0A 2A7IX 3E3SA 4DC5A 1DU5A 1THVA 2VI3A 2I0WA 2VI2A 3V84A 2AHNA 5KW8A 3VCGA 5JVXA 3VCIA 3VHFA 3WXSA 4EL3A 3V82A 3VHGA 3VCJA 5L4RA 4AXRA 4EL2A 2BLUA 2D8PA 3N03A 3G7MA 5LN0A 3ALDA 5LH3A 2PE7A 1LR2A 4BARA 4TVTA 5KW5A 4EL7A 1LY0A 2VHRA 3ZS3A 5LH0A 5A47A 3VCEA 5FGXA 2WBZA 5LH6A 3AL7A 5LH5A 4JRUA 4ZG3A 4XVBA 2G4YA 3V88A 1PP3A 5LH7A 3X3OA 4DIZA 3V87A 4ZXRA 2D8OA 4L2JA 3X3QA 5AVGA 3N02A 3ZEJA 5K7QA 4DC6A 3DZNA 3E0AA 5LH1A 5KW0A 3WOUA 3QY5A 4EKBA 5KW4A 3VJQA 1LXZA 5FGTA 3V8AA
chains in the Genus database with same CATH superfamily
4EKTA 3VCKA 3GD9A 4C3CA 3V7VA 4EK0A 5KVWA 4L5HA 3X3RA 3VCHA 2OQNA 1LR3A 1RQWA 4DIYA 2VU7A 4MBTA 3DZRA 3DZPA 3X3TA 4DJ1A 2VHKA 4ELAA 5KVZA 3AOKA 1AUNA 2VI4A 5AMZA 4EKAA 4AXUA 1Z3QA 5KVXA 2VU6A 4EKHA 1PCVA 5T3GA 3X3SA 4EKOA 5KW3A 2VI1A 5KW7A 3X3PA 2BLRA 1THWA 1THUA 5LMHA 4BCTA 3GD0A 4BALA 4DJ0A 2A7IX 3E3SA 4DC5A 1DU5A 1THVA 2VI3A 2I0WA 2VI2A 3V84A 2AHNA 5KW8A 3VCGA 5JVXA 3VCIA 3VHFA 3WXSA 4EL3A 3V82A 3VHGA 3VCJA 5L4RA 4AXRA 4EL2A 2BLUA 2D8PA 3N03A 3G7MA 5LN0A 3ALDA 5LH3A 2PE7A 1LR2A 4BARA 4TVTA 5KW5A 4EL7A 1LY0A 2VHRA 3ZS3A 5LH0A 5A47A 3VCEA 5FGXA 2WBZA 5LH6A 3AL7A 5LH5A 4JRUA 4ZG3A 4XVBA 2G4YA 3V88A 1PP3A 5LH7A 3X3OA 4DIZA 3V87A 4ZXRA 2D8OA 4L2JA 3X3QA 5AVGA 3N02A 3ZEJA 5K7QA 4DC6A 3DZNA 3E0AA 5LH1A 5KW0A 3WOUA 3QY5A 4EKBA 5KW4A 3VJQA 1LXZA 5FGTA 3V8AA
chains in the Genus database with same CATH topology
4EKTA 3VCKA 3GD9A 4C3CA 3V7VA 4EK0A 5KVWA 4L5HA 3X3RA 3VCHA 2OQNA 1LR3A 1RQWA 4DIYA 2VU7A 4MBTA 3DZRA 3DZPA 3X3TA 4DJ1A 2VHKA 4ELAA 5KVZA 3AOKA 1AUNA 2VI4A 5AMZA 4EKAA 4AXUA 1Z3QA 5KVXA 2VU6A 4EKHA 1PCVA 5T3GA 3X3SA 4EKOA 5KW3A 2VI1A 5KW7A 3X3PA 2BLRA 1THWA 1THUA 5LMHA 4BCTA 3GD0A 4BALA 4DJ0A 2A7IX 3E3SA 4DC5A 1DU5A 1THVA 2VI3A 2I0WA 2VI2A 3V84A 2AHNA 5KW8A 3VCGA 5JVXA 3VCIA 3VHFA 3WXSA 4EL3A 3V82A 3VHGA 3VCJA 5L4RA 4AXRA 4EL2A 2BLUA 2D8PA 3N03A 3G7MA 5LN0A 3ALDA 5LH3A 2PE7A 1LR2A 4BARA 4TVTA 5KW5A 4EL7A 1LY0A 2VHRA 3ZS3A 5LH0A 5A47A 3VCEA 5FGXA 2WBZA 5LH6A 3AL7A 5LH5A 4JRUA 4ZG3A 4XVBA 2G4YA 3V88A 1PP3A 5LH7A 3X3OA 4DIZA 3V87A 4ZXRA 2D8OA 4L2JA 3X3QA 5AVGA 3N02A 3ZEJA 5K7QA 4DC6A 3DZNA 3E0AA 5LH1A 5KW0A 3WOUA 3QY5A 4EKBA 5KW4A 3VJQA 1LXZA 5FGTA 3V8AA
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 4EKT A;  3VCK A;  3GD9 A;  4C3C A;  3V7V A;  4EK0 A;  5KVW A;  4L5H A;  3X3R A;  3VCH A;  2OQN A;  1LR3 A;  1RQW A;  4DIY A;  2VU7 A;  4MBT A;  3DZR A;  3DZP A;  3X3T A;  4DJ1 A;  2VHK A;  4ELA A;  5KVZ A;  3AOK A;  1AUN A;  2VI4 A;  5AMZ A;  4EKA A;  4AXU A;  1Z3Q A;  5KVX A;  2VU6 A;  4EKH A;  1PCV A;  5T3G A;  3X3S A;  4EKO A;  5KW3 A;  2VI1 A;  5KW7 A;  3X3P A;  2BLR A;  1THW A;  1THU A;  5LMH A;  4BCT A;  3GD0 A;  4BAL A;  4DJ0 A;  2A7I X;  3E3S A;  4DC5 A;  1DU5 A;  1THV A;  2VI3 A;  2I0W A;  2VI2 A;  3V84 A;  2AHN A;  5KW8 A;  3VCG A;  5JVX A;  3VCI A;  3VHF A;  3WXS A;  4EL3 A;  3V82 A;  3VHG A;  3VCJ A;  5L4R A;  4AXR A;  4EL2 A;  2BLU A;  2D8P A;  3N03 A;  3G7M A;  5LN0 A;  3ALD A;  5LH3 A;  2PE7 A;  1LR2 A;  4BAR A;  4TVT A;  5KW5 A;  4EL7 A;  1LY0 A;  2VHR A;  3ZS3 A;  5LH0 A;  5A47 A;  3VCE A;  5FGX A;  2WBZ A;  5LH6 A;  3AL7 A;  5LH5 A;  4JRU A;  4ZG3 A;  4XVB A;  2G4Y A;  3V88 A;  1PP3 A;  5LH7 A;  3X3O A;  4DIZ A;  3V87 A;  4ZXR A;  2D8O A;  4L2J A;  3X3Q A;  5AVG A;  3N02 A;  3ZEJ A;  5K7Q A;  4DC6 A;  3DZN A;  3E0A A;  5LH1 A;  5KW0 A;  3WOU A;  3QY5 A;  4EKB A;  5KW4 A;  3VJQ A;  1LXZ A;  5FGT A;  3V8A A; 
#chains in the Genus database with same CATH topology
 4EKT A;  3VCK A;  3GD9 A;  4C3C A;  3V7V A;  4EK0 A;  5KVW A;  4L5H A;  3X3R A;  3VCH A;  2OQN A;  1LR3 A;  1RQW A;  4DIY A;  2VU7 A;  4MBT A;  3DZR A;  3DZP A;  3X3T A;  4DJ1 A;  2VHK A;  4ELA A;  5KVZ A;  3AOK A;  1AUN A;  2VI4 A;  5AMZ A;  4EKA A;  4AXU A;  1Z3Q A;  5KVX A;  2VU6 A;  4EKH A;  1PCV A;  5T3G A;  3X3S A;  4EKO A;  5KW3 A;  2VI1 A;  5KW7 A;  3X3P A;  2BLR A;  1THW A;  1THU A;  5LMH A;  4BCT A;  3GD0 A;  4BAL A;  4DJ0 A;  2A7I X;  3E3S A;  4DC5 A;  1DU5 A;  1THV A;  2VI3 A;  2I0W A;  2VI2 A;  3V84 A;  2AHN A;  5KW8 A;  3VCG A;  5JVX A;  3VCI A;  3VHF A;  3WXS A;  4EL3 A;  3V82 A;  3VHG A;  3VCJ A;  5L4R A;  4AXR A;  4EL2 A;  2BLU A;  2D8P A;  3N03 A;  3G7M A;  5LN0 A;  3ALD A;  5LH3 A;  2PE7 A;  1LR2 A;  4BAR A;  4TVT A;  5KW5 A;  4EL7 A;  1LY0 A;  2VHR A;  3ZS3 A;  5LH0 A;  5A47 A;  3VCE A;  5FGX A;  2WBZ A;  5LH6 A;  3AL7 A;  5LH5 A;  4JRU A;  4ZG3 A;  4XVB A;  2G4Y A;  3V88 A;  1PP3 A;  5LH7 A;  3X3O A;  4DIZ A;  3V87 A;  4ZXR A;  2D8O A;  4L2J A;  3X3Q A;  5AVG A;  3N02 A;  3ZEJ A;  5K7Q A;  4DC6 A;  3DZN A;  3E0A A;  5LH1 A;  5KW0 A;  3WOU A;  3QY5 A;  4EKB A;  5KW4 A;  3VJQ A;  1LXZ A;  5FGT A;  3V8A A; 
#chains in the Genus database with same CATH homology
 4EKT A;  3VCK A;  3GD9 A;  4C3C A;  3V7V A;  4EK0 A;  5KVW A;  4L5H A;  3X3R A;  3VCH A;  2OQN A;  1LR3 A;  1RQW A;  4DIY A;  2VU7 A;  4MBT A;  3DZR A;  3DZP A;  3X3T A;  4DJ1 A;  2VHK A;  4ELA A;  5KVZ A;  3AOK A;  1AUN A;  2VI4 A;  5AMZ A;  4EKA A;  4AXU A;  1Z3Q A;  5KVX A;  2VU6 A;  4EKH A;  1PCV A;  5T3G A;  3X3S A;  4EKO A;  5KW3 A;  2VI1 A;  5KW7 A;  3X3P A;  2BLR A;  1THW A;  1THU A;  5LMH A;  4BCT A;  3GD0 A;  4BAL A;  4DJ0 A;  2A7I X;  3E3S A;  4DC5 A;  1DU5 A;  1THV A;  2VI3 A;  2I0W A;  2VI2 A;  3V84 A;  2AHN A;  5KW8 A;  3VCG A;  5JVX A;  3VCI A;  3VHF A;  3WXS A;  4EL3 A;  3V82 A;  3VHG A;  3VCJ A;  5L4R A;  4AXR A;  4EL2 A;  2BLU A;  2D8P A;  3N03 A;  3G7M A;  5LN0 A;  3ALD A;  5LH3 A;  2PE7 A;  1LR2 A;  4BAR A;  4TVT A;  5KW5 A;  4EL7 A;  1LY0 A;  2VHR A;  3ZS3 A;  5LH0 A;  5A47 A;  3VCE A;  5FGX A;  2WBZ A;  5LH6 A;  3AL7 A;  5LH5 A;  4JRU A;  4ZG3 A;  4XVB A;  2G4Y A;  3V88 A;  1PP3 A;  5LH7 A;  3X3O A;  4DIZ A;  3V87 A;  4ZXR A;  2D8O A;  4L2J A;  3X3Q A;  5AVG A;  3N02 A;  3ZEJ A;  5K7Q A;  4DC6 A;  3DZN A;  3E0A A;  5LH1 A;  5KW0 A;  3WOU A;  3QY5 A;  4EKB A;  5KW4 A;  3VJQ A;  1LXZ A;  5FGT A;  3V8A A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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