2BLUA

Thaumatin after a high dose x-ray "burn"
Total Genus 51
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
51
sequence length
206
structure length
206
Chain Sequence
ATFEIVNRCSYTVWAAASKGDAALDAGGRQLNSGESWTINVEPGTNGGKIWARTDCYFDDSGSGICKTGDCGGLLRCKRFGRPPTTLAEFSLNQYGKDYIDISNIKGFNVPMNFSPTTRGCRGVRCAADIVGQCPAKLKAPGGGCNDACTVFQTSEYCCTTGKCGPTEYSRFFKRLCPDAFSYVLDKPTTVTCPGSSNYRVTFCPT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
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molecule tags Plant protein
molecule keywords THAUMATIN I
publication title Improving Radiation-Damage Substructures for Rip.
pubmed doi rcsb
total genus 51
structure length 206
sequence length 206
ec nomenclature
pdb deposition date 2005-03-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00314 Thaumatin Thaumatin family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.110.10 Mainly Beta Sandwich Thaumatin Thaumatin 2bluA00
3AL7A 2G4YA 4EK0A 5KW4A 2VI1A 3GD0A 5FGTA 3WXSA 3N02A 4ZG3A 3GD9A 1LR2A 5KVZA 5AVGA 2VHKA 5JVXA 3V84A 3DZPA 3E0AA 4ZXRA 4L5HA 5KW3A 4BARA 4DJ0A 3VHFA 5A47A 4XVBA 2AHNA 3X3SA 5KVWA 4EKOA 5LH6A 3X3RA 3ZS3A 3ZEJA 5L4RA 5FGXA 2WBZA 1THVA 4DJ1A 5LH1A 2PE7A 4DIYA 3VCKA 4MBTA 3AOKA 3ALDA 5LH5A 3X3TA 2D8PA 3V82A 3VCIA 3WOUA 2VHRA 4AXUA 3VJQA 1LR3A 4EKAA 4EL3A 3V8AA 4ELAA 1DU5A 1PCVA 4L2JA 4JRUA 5T3GA 1THUA 2A7IX 1AUNA 5AMZA 1LXZA 5KW0A 1LY0A 4C3CA 3DZNA 4DC6A 3V88A 1Z3QA 1THWA 3VCEA 5LN0A 2BLUA 3DZRA 5LH0A 1RQWA 3X3PA 5KW7A 2OQNA 5LH3A 2VI4A 3V87A 4DC5A 5KW8A 2VU6A 4AXRA 3X3OA 4BCTA 4EKBA 2BLRA 5LMHA 5KVXA 3VHGA 3VCJA 2VI2A 3X3QA 5KW5A 2D8OA 4TVTA 3V7VA 3VCHA 3QY5A 2VU7A 4EKHA 4EKTA 3G7MA 4EL7A 1PP3A 3E3SA 3VCGA 5K7QA 4BALA 3N03A 5LH7A 4DIZA 4EL2A 2VI3A 2I0WA
chains in the Genus database with same CATH superfamily
3AL7A 2G4YA 4EK0A 5KW4A 2VI1A 3GD0A 5FGTA 3WXSA 3N02A 4ZG3A 3GD9A 1LR2A 5KVZA 5AVGA 2VHKA 5JVXA 3V84A 3DZPA 3E0AA 4ZXRA 4L5HA 5KW3A 4BARA 4DJ0A 3VHFA 5A47A 4XVBA 2AHNA 3X3SA 5KVWA 4EKOA 5LH6A 3X3RA 3ZS3A 3ZEJA 5L4RA 5FGXA 2WBZA 1THVA 4DJ1A 5LH1A 2PE7A 4DIYA 3VCKA 4MBTA 3AOKA 3ALDA 5LH5A 3X3TA 2D8PA 3V82A 3VCIA 3WOUA 2VHRA 4AXUA 3VJQA 1LR3A 4EKAA 4EL3A 3V8AA 4ELAA 1DU5A 1PCVA 4L2JA 4JRUA 5T3GA 1THUA 2A7IX 1AUNA 5AMZA 1LXZA 5KW0A 1LY0A 4C3CA 3DZNA 4DC6A 3V88A 1Z3QA 1THWA 3VCEA 5LN0A 2BLUA 3DZRA 5LH0A 1RQWA 3X3PA 5KW7A 2OQNA 5LH3A 2VI4A 3V87A 4DC5A 5KW8A 2VU6A 4AXRA 3X3OA 4BCTA 4EKBA 2BLRA 5LMHA 5KVXA 3VHGA 3VCJA 2VI2A 3X3QA 5KW5A 2D8OA 4TVTA 3V7VA 3VCHA 3QY5A 2VU7A 4EKHA 4EKTA 3G7MA 4EL7A 1PP3A 3E3SA 3VCGA 5K7QA 4BALA 3N03A 5LH7A 4DIZA 4EL2A 2VI3A 2I0WA
chains in the Genus database with same CATH topology
3AL7A 2G4YA 4EK0A 5KW4A 2VI1A 3GD0A 5FGTA 3WXSA 3N02A 4ZG3A 3GD9A 1LR2A 5KVZA 5AVGA 2VHKA 5JVXA 3V84A 3DZPA 3E0AA 4ZXRA 4L5HA 5KW3A 4BARA 4DJ0A 3VHFA 5A47A 4XVBA 2AHNA 3X3SA 5KVWA 4EKOA 5LH6A 3X3RA 3ZS3A 3ZEJA 5L4RA 5FGXA 2WBZA 1THVA 4DJ1A 5LH1A 2PE7A 4DIYA 3VCKA 4MBTA 3AOKA 3ALDA 5LH5A 3X3TA 2D8PA 3V82A 3VCIA 3WOUA 2VHRA 4AXUA 3VJQA 1LR3A 4EKAA 4EL3A 3V8AA 4ELAA 1DU5A 1PCVA 4L2JA 4JRUA 5T3GA 1THUA 2A7IX 1AUNA 5AMZA 1LXZA 5KW0A 1LY0A 4C3CA 3DZNA 4DC6A 3V88A 1Z3QA 1THWA 3VCEA 5LN0A 2BLUA 3DZRA 5LH0A 1RQWA 3X3PA 5KW7A 2OQNA 5LH3A 2VI4A 3V87A 4DC5A 5KW8A 2VU6A 4AXRA 3X3OA 4BCTA 4EKBA 2BLRA 5LMHA 5KVXA 3VHGA 3VCJA 2VI2A 3X3QA 5KW5A 2D8OA 4TVTA 3V7VA 3VCHA 3QY5A 2VU7A 4EKHA 4EKTA 3G7MA 4EL7A 1PP3A 3E3SA 3VCGA 5K7QA 4BALA 3N03A 5LH7A 4DIZA 4EL2A 2VI3A 2I0WA
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 3AL7 A;  2G4Y A;  4EK0 A;  5KW4 A;  2VI1 A;  3GD0 A;  5FGT A;  3WXS A;  3N02 A;  4ZG3 A;  3GD9 A;  1LR2 A;  5KVZ A;  5AVG A;  2VHK A;  5JVX A;  3V84 A;  3DZP A;  3E0A A;  4ZXR A;  4L5H A;  5KW3 A;  4BAR A;  4DJ0 A;  3VHF A;  5A47 A;  4XVB A;  2AHN A;  3X3S A;  5KVW A;  4EKO A;  5LH6 A;  3X3R A;  3ZS3 A;  3ZEJ A;  5L4R A;  5FGX A;  2WBZ A;  1THV A;  4DJ1 A;  5LH1 A;  2PE7 A;  4DIY A;  3VCK A;  4MBT A;  3AOK A;  3ALD A;  5LH5 A;  3X3T A;  2D8P A;  3V82 A;  3VCI A;  3WOU A;  2VHR A;  4AXU A;  3VJQ A;  1LR3 A;  4EKA A;  4EL3 A;  3V8A A;  4ELA A;  1DU5 A;  1PCV A;  4L2J A;  4JRU A;  5T3G A;  1THU A;  2A7I X;  1AUN A;  5AMZ A;  1LXZ A;  5KW0 A;  1LY0 A;  4C3C A;  3DZN A;  4DC6 A;  3V88 A;  1Z3Q A;  1THW A;  3VCE A;  5LN0 A;  2BLU A;  3DZR A;  5LH0 A;  1RQW A;  3X3P A;  5KW7 A;  2OQN A;  5LH3 A;  2VI4 A;  3V87 A;  4DC5 A;  5KW8 A;  2VU6 A;  4AXR A;  3X3O A;  4BCT A;  4EKB A;  2BLR A;  5LMH A;  5KVX A;  3VHG A;  3VCJ A;  2VI2 A;  3X3Q A;  5KW5 A;  2D8O A;  4TVT A;  3V7V A;  3VCH A;  3QY5 A;  2VU7 A;  4EKH A;  4EKT A;  3G7M A;  4EL7 A;  1PP3 A;  3E3S A;  3VCG A;  5K7Q A;  4BAL A;  3N03 A;  5LH7 A;  4DIZ A;  4EL2 A;  2VI3 A;  2I0W A; 
#chains in the Genus database with same CATH topology
 3AL7 A;  2G4Y A;  4EK0 A;  5KW4 A;  2VI1 A;  3GD0 A;  5FGT A;  3WXS A;  3N02 A;  4ZG3 A;  3GD9 A;  1LR2 A;  5KVZ A;  5AVG A;  2VHK A;  5JVX A;  3V84 A;  3DZP A;  3E0A A;  4ZXR A;  4L5H A;  5KW3 A;  4BAR A;  4DJ0 A;  3VHF A;  5A47 A;  4XVB A;  2AHN A;  3X3S A;  5KVW A;  4EKO A;  5LH6 A;  3X3R A;  3ZS3 A;  3ZEJ A;  5L4R A;  5FGX A;  2WBZ A;  1THV A;  4DJ1 A;  5LH1 A;  2PE7 A;  4DIY A;  3VCK A;  4MBT A;  3AOK A;  3ALD A;  5LH5 A;  3X3T A;  2D8P A;  3V82 A;  3VCI A;  3WOU A;  2VHR A;  4AXU A;  3VJQ A;  1LR3 A;  4EKA A;  4EL3 A;  3V8A A;  4ELA A;  1DU5 A;  1PCV A;  4L2J A;  4JRU A;  5T3G A;  1THU A;  2A7I X;  1AUN A;  5AMZ A;  1LXZ A;  5KW0 A;  1LY0 A;  4C3C A;  3DZN A;  4DC6 A;  3V88 A;  1Z3Q A;  1THW A;  3VCE A;  5LN0 A;  2BLU A;  3DZR A;  5LH0 A;  1RQW A;  3X3P A;  5KW7 A;  2OQN A;  5LH3 A;  2VI4 A;  3V87 A;  4DC5 A;  5KW8 A;  2VU6 A;  4AXR A;  3X3O A;  4BCT A;  4EKB A;  2BLR A;  5LMH A;  5KVX A;  3VHG A;  3VCJ A;  2VI2 A;  3X3Q A;  5KW5 A;  2D8O A;  4TVT A;  3V7V A;  3VCH A;  3QY5 A;  2VU7 A;  4EKH A;  4EKT A;  3G7M A;  4EL7 A;  1PP3 A;  3E3S A;  3VCG A;  5K7Q A;  4BAL A;  3N03 A;  5LH7 A;  4DIZ A;  4EL2 A;  2VI3 A;  2I0W A; 
#chains in the Genus database with same CATH homology
 3AL7 A;  2G4Y A;  4EK0 A;  5KW4 A;  2VI1 A;  3GD0 A;  5FGT A;  3WXS A;  3N02 A;  4ZG3 A;  3GD9 A;  1LR2 A;  5KVZ A;  5AVG A;  2VHK A;  5JVX A;  3V84 A;  3DZP A;  3E0A A;  4ZXR A;  4L5H A;  5KW3 A;  4BAR A;  4DJ0 A;  3VHF A;  5A47 A;  4XVB A;  2AHN A;  3X3S A;  5KVW A;  4EKO A;  5LH6 A;  3X3R A;  3ZS3 A;  3ZEJ A;  5L4R A;  5FGX A;  2WBZ A;  1THV A;  4DJ1 A;  5LH1 A;  2PE7 A;  4DIY A;  3VCK A;  4MBT A;  3AOK A;  3ALD A;  5LH5 A;  3X3T A;  2D8P A;  3V82 A;  3VCI A;  3WOU A;  2VHR A;  4AXU A;  3VJQ A;  1LR3 A;  4EKA A;  4EL3 A;  3V8A A;  4ELA A;  1DU5 A;  1PCV A;  4L2J A;  4JRU A;  5T3G A;  1THU A;  2A7I X;  1AUN A;  5AMZ A;  1LXZ A;  5KW0 A;  1LY0 A;  4C3C A;  3DZN A;  4DC6 A;  3V88 A;  1Z3Q A;  1THW A;  3VCE A;  5LN0 A;  2BLU A;  3DZR A;  5LH0 A;  1RQW A;  3X3P A;  5KW7 A;  2OQN A;  5LH3 A;  2VI4 A;  3V87 A;  4DC5 A;  5KW8 A;  2VU6 A;  4AXR A;  3X3O A;  4BCT A;  4EKB A;  2BLR A;  5LMH A;  5KVX A;  3VHG A;  3VCJ A;  2VI2 A;  3X3Q A;  5KW5 A;  2D8O A;  4TVT A;  3V7V A;  3VCH A;  3QY5 A;  2VU7 A;  4EKH A;  4EKT A;  3G7M A;  4EL7 A;  1PP3 A;  3E3S A;  3VCG A;  5K7Q A;  4BAL A;  3N03 A;  5LH7 A;  4DIZ A;  4EL2 A;  2VI3 A;  2I0W A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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