2IN9A

Crystal structure of mtu reca intein, splicing domain
Total Genus 30
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
139
structure length
139
Chain Sequence
CLAEGTRIFDPVTGTTHRIEDVVDGRKPIHVVAAAKDGTLHARPVVSWFDQGTRDVIGLRIAGGAIVWATPDHKVLTEYGWRAAGELRKGDRVAVRDVETGELRYSVIREVLPTRRARTFDLEVEELHTLVAEGVVVHN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Endonuclease PI-MtuI
publication title Crystallographic and mutational studies of Mycobacterium tuberculosis recA mini-inteins suggest a pivotal role for a highly conserved aspartate residue.
pubmed doi rcsb
source organism Mycobacterium tuberculosis
total genus 30
structure length 139
sequence length 139
ec nomenclature ec 3.1.-.-:
pdb deposition date 2006-10-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF14890 Intein_splicing Intein splicing domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.170.16.10 Mainly Beta Beta Complex Endonuclease - Pi-scei; Chain A, domain 1 Hedgehog/Intein (Hint) domain 2in9A00
1GPPA 2IN0A 1ZDEA 2KEQA 2CW8A 1AT0A 1ZD7A 5I0AA 4O1SA 3IFJA 4O1RA 4E2TA 2LCJA 2CW7A 1MI8A 2LQMA 2LWYA 5K08A 1AM2A 1DQ3A 1VDEA 3IGDA 2IMZA 4KL5A 4KL6A 1LWTA 2IN8A 1JVAA 4OZ6A 2L8LA 1UM2A 3NZMA 2JNQA 2IN9A 1DFAA 2JMZA 4E2UA 4GIGA 1LWSA 1EF0A
chains in the Genus database with same CATH superfamily
4QFQA 1GPPA 2IN0A 1ZDEA 2KEQA 2CW8A 4LX3A 1AT0A 1ZD7A 5I0AA 4O1SA 3IFJA 4O1RA 4E2TA 2LCJA 2CW7A 1MI8A 2LQMA 2LWYA 5K08A 1AM2A 1DQ3A 1VDEA 3IGDA 2IMZA 4KL5A 4KL6A 1LWTA 2IN8A 1JVAA 4OZ6A 2L8LA 1UM2A 3NZMA 2JNQA 2IN9A 1DFAA 2JMZA 4E2UA 4GIGA 1LWSA 1EF0A
chains in the Genus database with same CATH topology
1GPPA 2IN0A 1ZDEA 2KEQA 2CW8A 1AT0A 1ZD7A 5I0AA 4O1SA 3IFJA 4O1RA 4E2TA 2LCJA 2CW7A 1MI8A 2LQMA 2LWYA 5K08A 1AM2A 1DQ3A 1VDEA 3IGDA 2IMZA 4KL5A 4KL6A 1LWTA 2IN8A 1JVAA 4OZ6A 2L8LA 1UM2A 3NZMA 2JNQA 2IN9A 1DFAA 2JMZA 4E2UA 4GIGA 1LWSA 1EF0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1GPP A;  2IN0 A;  1ZDE A;  2KEQ A;  2CW8 A;  1AT0 A;  1ZD7 A;  5I0A A;  4O1S A;  3IFJ A;  4O1R A;  4E2T A;  2LCJ A;  2CW7 A;  1MI8 A;  2LQM A;  2LWY A;  5K08 A;  1AM2 A;  1DQ3 A;  1VDE A;  3IGD A;  2IMZ A;  4KL5 A;  4KL6 A;  1LWT A;  2IN8 A;  1JVA A;  4OZ6 A;  2L8L A;  1UM2 A;  3NZM A;  2JNQ A;  2IN9 A;  1DFA A;  2JMZ A;  4E2U A;  4GIG A;  1LWS A;  1EF0 A; 
#chains in the Genus database with same CATH topology
 4QFQ A;  1GPP A;  2IN0 A;  1ZDE A;  2KEQ A;  2CW8 A;  4LX3 A;  1AT0 A;  1ZD7 A;  5I0A A;  4O1S A;  3IFJ A;  4O1R A;  4E2T A;  2LCJ A;  2CW7 A;  1MI8 A;  2LQM A;  2LWY A;  5K08 A;  1AM2 A;  1DQ3 A;  1VDE A;  3IGD A;  2IMZ A;  4KL5 A;  4KL6 A;  1LWT A;  2IN8 A;  1JVA A;  4OZ6 A;  2L8L A;  1UM2 A;  3NZM A;  2JNQ A;  2IN9 A;  1DFA A;  2JMZ A;  4E2U A;  4GIG A;  1LWS A;  1EF0 A; 
#chains in the Genus database with same CATH homology
 1GPP A;  2IN0 A;  1ZDE A;  2KEQ A;  2CW8 A;  1AT0 A;  1ZD7 A;  5I0A A;  4O1S A;  3IFJ A;  4O1R A;  4E2T A;  2LCJ A;  2CW7 A;  1MI8 A;  2LQM A;  2LWY A;  5K08 A;  1AM2 A;  1DQ3 A;  1VDE A;  3IGD A;  2IMZ A;  4KL5 A;  4KL6 A;  1LWT A;  2IN8 A;  1JVA A;  4OZ6 A;  2L8L A;  1UM2 A;  3NZM A;  2JNQ A;  2IN9 A;  1DFA A;  2JMZ A;  4E2U A;  4GIG A;  1LWS A;  1EF0 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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