2WGMA

Complete ion-coordination structure in the rotor ring of na-dependent f-atp synthase
Total Genus 38
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
38
sequence length
89
structure length
89
Chain Sequence
MDMLFAKTVVLAASAVGAGTAMIAGIGPGVGQGYAAGKAVESVARQPEAKGDIISTMVLGQAVAESTGIYSLVIALILLYANPFVGLLG
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Membrane protein
molecule keywords ATP SYNTHASE SUBUNIT C, SODIUM ION SPECIFIC
publication title Complete Ion-Coordination Structure in the Rotor Ring of Na(+)-Dependent F-ATP Synthases.
pubmed doi rcsb
total genus 38
structure length 89
sequence length 89
chains with identical sequence B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, a, b, c, d, e, f, g, h, i, j, k, l, m, n, o, p, q, r, s, t, u, v
ec nomenclature
pdb deposition date 2009-04-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00137 ATP-synt_C ATP synthase subunit C
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.20.10 Mainly Alpha Up-down Bundle F1FO ATP Synthase F1F0 ATP synthase subunit C 2wgmA01
5DN6J 3U2YK 1C99A 1C0VA 4CBKA 2XNDJ 2WGMA 4V1FA 4CBJC 4V1GA 1IJPA 5BQJA 3U2FK 5BPSA 5BQ6A 2X2VA 3V3CA 1YCEA 4F4SA 2WPDJ 3UD0K 2XOKK 4BEMA 1ATYA 5BQAA 2XQUA 1WU0A 2W5JA 1L6TA 4V1HA 3ZK1A 2WIEA 4CBJA 1A91A 3U32K 2XQSA 2XQTA 3ZK2A 1C17A 5FL7K
chains in the Genus database with same CATH superfamily
5DN6J 3U2YK 1C99A 1C0VA 4CBKA 2XNDJ 2WGMA 4V1FA 4CBJC 4V1GA 1IJPA 5BQJA 3U2FK 5BPSA 5BQ6A 2X2VA 3V3CA 1YCEA 4F4SA 2WPDJ 3UD0K 3MAYA 2XOKK 4BEMA 1ATYA 5BQAA 2XQUA 1WU0A 2W5JA 1L6TA 4V1HA 3ZK1A 2WIEA 4CBJA 3NB0A 1A91A 3U32K 2XQSA 2XQTA 3ZK2A 1C17A 5FL7K
chains in the Genus database with same CATH topology
5DN6J 3U2YK 1C99A 1C0VA 4CBKA 2XNDJ 2WGMA 4V1FA 4CBJC 4V1GA 1IJPA 5BQJA 3U2FK 5BPSA 5BQ6A 2X2VA 3V3CA 1YCEA 4F4SA 2WPDJ 3UD0K 2XOKK 4BEMA 1ATYA 5BQAA 2XQUA 1WU0A 2W5JA 1L6TA 4V1HA 3ZK1A 2WIEA 4CBJA 1A91A 3U32K 2XQSA 2XQTA 3ZK2A 1C17A 5FL7K
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5DN6 J;  3U2Y K;  1C99 A;  1C0V A;  4CBK A;  2XND J;  2WGM A;  4V1F A;  4CBJ C;  4V1G A;  1IJP A;  5BQJ A;  3U2F K;  5BPS A;  5BQ6 A;  2X2V A;  3V3C A;  1YCE A;  4F4S A;  2WPD J;  3UD0 K;  2XOK K;  4BEM A;  1ATY A;  5BQA A;  2XQU A;  1WU0 A;  2W5J A;  1L6T A;  4V1H A;  3ZK1 A;  2WIE A;  4CBJ A;  1A91 A;  3U32 K;  2XQS A;  2XQT A;  3ZK2 A;  1C17 A;  5FL7 K; 
#chains in the Genus database with same CATH topology
 5DN6 J;  3U2Y K;  1C99 A;  1C0V A;  4CBK A;  2XND J;  2WGM A;  4V1F A;  4CBJ C;  4V1G A;  1IJP A;  5BQJ A;  3U2F K;  5BPS A;  5BQ6 A;  2X2V A;  3V3C A;  1YCE A;  4F4S A;  2WPD J;  3UD0 K;  3MAY A;  2XOK K;  4BEM A;  1ATY A;  5BQA A;  2XQU A;  1WU0 A;  2W5J A;  1L6T A;  4V1H A;  3ZK1 A;  2WIE A;  4CBJ A;  3NB0 A;  1A91 A;  3U32 K;  2XQS A;  2XQT A;  3ZK2 A;  1C17 A;  5FL7 K; 
#chains in the Genus database with same CATH homology
 5DN6 J;  3U2Y K;  1C99 A;  1C0V A;  4CBK A;  2XND J;  2WGM A;  4V1F A;  4CBJ C;  4V1G A;  1IJP A;  5BQJ A;  3U2F K;  5BPS A;  5BQ6 A;  2X2V A;  3V3C A;  1YCE A;  4F4S A;  2WPD J;  3UD0 K;  2XOK K;  4BEM A;  1ATY A;  5BQA A;  2XQU A;  1WU0 A;  2W5J A;  1L6T A;  4V1H A;  3ZK1 A;  2WIE A;  4CBJ A;  1A91 A;  3U32 K;  2XQS A;  2XQT A;  3ZK2 A;  1C17 A;  5FL7 K; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...