The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
18
|
sequence length |
96
|
structure length |
96
|
Chain Sequence |
AMANIKIRQETPTAFYIKVHDTDNVAIIVNDNGLKAGTRFPDGLELIEHIPQGHKVALLDIPANGEIIRYGEVIGYAVRAIPRGSWIDESMVVLPE
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Lyase
|
| molecule keywords |
D-galactarate dehydratase
|
| publication title |
The crystal structure of the N-terminal domain of D-galactarate dehydratase from Escherichia coli CFT073
rcsb |
| source organism |
Escherichia coli
|
| total genus |
18
|
| structure length |
96
|
| sequence length |
96
|
| chains with identical sequence |
B
|
| ec nomenclature |
ec
4.2.1.42: Galactarate dehydratase. |
| pdb deposition date | 2010-01-07 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF08666 | SAF | SAF domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | Alpha-Beta Complex | Type Iii Antifreeze Protein Isoform Hplc 12 | Type Iii Antifreeze Protein Isoform Hplc 12 |
#chains in the Genus database with same CATH superfamily 3K3S A; 3LAZ A; #chains in the Genus database with same CATH topology 4IPJ A; 7MSI A; 3CM4 A; 6MSI A; 8AME A; 1OPS A; 1HG7 A; 2WQP A; 1XUZ A; 4NY6 A; 7AME A; 3QF6 A; 2ZDR A; 9AME A; 1C89 A; 1JAB A; 2JIA A; 3FRN A; 4IPI A; 3RDN A; 1C8A A; 1MSI A; 2LX3 A; 2LX2 A; 4AME A; 5MSI A; 4UR4 A; 1UCS A; 1AME A; 1MSJ A; 3MSI A; 4UR6 A; 1B7J A; 1KDF A; 1B7K A; 1WVO A; 1EKL A; 2MSI A; 3G8R A; 3NLA A; 1GZI A; 2AME A; 3AME A; 9MSI A; 3LAZ A; 8MSI A; 1KDE A; 1B7I A; 6AME A; 1XUU A; 4MSI A; 2MSJ A; 1VLI A; 3K3S A; 2SPG A; #chains in the Genus database with same CATH homology 3K3S A; 3LAZ A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
