The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
25
|
sequence length |
123
|
structure length |
123
|
Chain Sequence |
SSTHRKFGGSGGSPFSGSGLSSIAVRSGSYLDAIIIDGVHHGGSGGNLSPTFTFGSGEYISNMTIRSGDYIDNISFETNMGRRFGPYGGSGGSANTLSNVKVIQINGSAGDYLDSLDIYYEQY
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Sugar binding protein
|
| molecule keywords |
Griffithsin
|
| publication title |
Monomerization of viral entry inhibitor griffithsin elucidates the relationship between multivalent binding to carbohydrates and anti-HIV activity.
pubmed doi rcsb |
| source organism |
Griffithsia
|
| total genus |
25
|
| structure length |
123
|
| sequence length |
123
|
| ec nomenclature | |
| pdb deposition date | 2010-01-28 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01419 | Jacalin | Jacalin-like lectin domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Aligned Prism | Vitelline Membrane Outer Layer Protein I, subunit A | Jacalin-like lectin domain |
#chains in the Genus database with same CATH superfamily 5J4T A; 1KU8 A; 2JZ4 A; 1WS4 A; 4PIT A; 2GTY A; 1WS5 C; 2BMY A; 1UGY C; 2GUD A; 3WOB A; 2GUX A; 3LLZ A; 1XXQ A; 3LL1 A; 4AKB A; 1C3N A; 1J4S A; 4R6R A; 3VY6 A; 3WOC A; 2GUE A; 3LM1 A; 4AKD A; 5AV7 A; 2BMZ A; 3R50 A; 1TOQ A; 3P8S A; 1JOT A; 3AQG A; 1WS4 C; 1XEZ A; 1KUJ A; 2HYR A; 1J4U A; 3VZF A; 1C3K A; 1UGW A; 5EXG A; 3R51 A; 4PIF A; 4MQ0 A; 3LKY A; 4PIU A; 1ZGR A; 1TP8 A; 4R6O A; 4WOG A; 1J4T A; 5J50 A; 2NU5 A; 3LLY A; 1OUW A; 5JM1 A; 1UGW C; 4AKC A; 5J51 A; 3MIU A; 1ZGS A; 2GUC A; 3LL2 A; 3R52 A; 3VZG A; 5J4X A; 1UGX A; 1UH0 A; 3O44 A; 3APA A; 1VBP A; 2HYQ A; 4PIK A; 4R6Q A; 1PXD A; 3LL0 A; 4GX7 A; 3VZE A; 1JAC A; 4AK4 A; 2BN0 A; 3MIT A; 1WS5 A; 1UH1 A; 1UGY A; 4R6N A; 3MIV A; 1M26 A; 2NUO A; 5BN6 E; 1VBO A; 1C3M A; 3VY7 A; 4DDN A; 4R6P A; 1X1V A; 1XXR A; #chains in the Genus database with same CATH topology 5J4T A; 1KU8 A; 2JZ4 A; 1WS4 A; 4PIT A; 2GTY A; 4D8M A; 1WS5 C; 2BMY A; 1UGY C; 2GUD A; 3WOB A; 4ARY A; 2GUX A; 3LLZ A; 3EB7 A; 1XXQ A; 3LL1 A; 4AKB A; 1C3N A; 1VMO A; 1J4S A; 4R6R A; 3VY6 A; 3WOC A; 2QP2 A; 1I5P A; 1CIY A; 2GUE A; 3LM1 A; 4AKD A; 5AV7 A; 2BMZ A; 3R50 A; 1TOQ A; 4MOA A; 1JI6 A; 3P8S A; 1JOT A; 3AQG A; 1WS4 C; 1XEZ A; 1KUJ A; 2HYR A; 1J4U A; 3VZF A; 1C3K A; 1UGW A; 5EXG A; 4QX1 A; 1W99 A; 3R51 A; 4PIF A; 4QX0 A; 4MQ0 A; 1DLC A; 3LKY A; 4PIU A; 1ZGR A; 1TP8 A; 4R6O A; 4WOG A; 1J4T A; 5J50 A; 2NU5 A; 3LLY A; 1OUW A; 2C9K A; 4QX3 A; 5JM1 A; 4QX2 A; 1UGW C; 4AKC A; 5J51 A; 3MIU A; 4W8J A; 1ZGS A; 2GUC A; 3LL2 A; 3R52 A; 3VZG A; 5J4X A; 1UGX A; 1UH0 A; 3O44 A; 3APA A; 1VBP A; 2HYQ A; 4PIK A; 4R6Q A; 3TOW A; 1PXD A; 3LL0 A; 4ARX A; 4GX7 A; 3VZE A; 1JAC A; 4AK4 A; 2BN0 A; 3MIT A; 1WS5 A; 1UH1 A; 1UGY A; 4R6N A; 3MIV A; 1M26 A; 2NUO A; 5BN6 E; 1VBO A; 1C3M A; 3VY7 A; 4DDN A; 4R6P A; 1X1V A; 1XXR A; #chains in the Genus database with same CATH homology 5J4T A; 1KU8 A; 2JZ4 A; 1WS4 A; 4PIT A; 2GTY A; 1WS5 C; 2BMY A; 1UGY C; 2GUD A; 3WOB A; 2GUX A; 3LLZ A; 1XXQ A; 3LL1 A; 4AKB A; 1C3N A; 1J4S A; 4R6R A; 3VY6 A; 3WOC A; 2GUE A; 3LM1 A; 4AKD A; 5AV7 A; 2BMZ A; 3R50 A; 1TOQ A; 3P8S A; 1JOT A; 3AQG A; 1WS4 C; 1XEZ A; 1KUJ A; 2HYR A; 1J4U A; 3VZF A; 1C3K A; 1UGW A; 5EXG A; 3R51 A; 4PIF A; 4MQ0 A; 3LKY A; 4PIU A; 1ZGR A; 1TP8 A; 4R6O A; 4WOG A; 1J4T A; 5J50 A; 2NU5 A; 3LLY A; 1OUW A; 5JM1 A; 1UGW C; 4AKC A; 5J51 A; 3MIU A; 1ZGS A; 2GUC A; 3LL2 A; 3R52 A; 3VZG A; 5J4X A; 1UGX A; 1UH0 A; 3O44 A; 3APA A; 1VBP A; 2HYQ A; 4PIK A; 4R6Q A; 1PXD A; 3LL0 A; 4GX7 A; 3VZE A; 1JAC A; 4AK4 A; 2BN0 A; 3MIT A; 1WS5 A; 1UH1 A; 1UGY A; 4R6N A; 3MIV A; 1M26 A; 2NUO A; 5BN6 E; 1VBO A; 1C3M A; 3VY7 A; 4DDN A; 4R6P A; 1X1V A; 1XXR A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
