The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
166
|
sequence length |
755
|
structure length |
747
|
Chain Sequence |
KIQHIIHENQLGLLFQQGSFGLEKESQRVTADGAIVTTPHPAVFGNRRYHPYIQTDFAESQLELITPPTKKLEDTFRWLSVIHEVVQRSLPEEEYIFPLSMPAGLPAIRVAQLDNPEDVAYREYLVKIYGKNKQMVSGIHYNFQLSPDLITRLFRLQNEYQSAVDFQNDLYLKMAKNFLRYQWILLYLLAATPTYFKDGSPLAKGQFVRSLRSSQYGYVNDPEINVSFDSVEKYVESLEHWVSTKLIAEKEFYSNVRLRGAKKAREFLTTGIQYLEFRLFDLNPFEIYGISLKDAKFIHVFALFMIWMDHTADQEEVELGKARLAEVAFEHPLEKTAYAVEGELVLLELLSMLEQIGAEPELFEIVKEKLTQFTDPSKTVAGRLVRAIEQAGSDQQLGAQLAQQYKAQAFERFYALSAFDNMELSTQALLFDVIQKGIHTEILDENDQFLCLKYGDHIEYVKNGNMTSHDSYISPLIMENKVVTKKVLQKAGFNVPQSVEFTSLEKAVASYALFENRAVVIKPKSTNYGLGITIFQQGVQNREDFAKALEIAFREDKEVMVEDYLVGTEYRFFVLGDETLAVLLRVPANVVGDSVHSVAELVAMKNDHPLRGDGSRTPLKKIALGEIEQLQLKEQGLTIDSIPAKDQLVQLRANSNISTGGDSIDMTDEMHESYKQLAVGITKAMGAAVCGVDLIIPDLKQPATPNLTSWGVIEANFNPMMMMHIFPYAGKSRRLTQNVIKMLFPEL
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Ligase
|
| molecule keywords |
Glutathione biosynthesis bifunctional protein gshAB
|
| publication title |
Structures of two bifunctional gamma-Glutamate-cysteine Ligase/Glutathione synthetases (GshF) reveal a novel hybrid ATP-grasp fold
rcsb |
| source organism |
Pasteurella multocida
|
| total genus |
166
|
| structure length |
747
|
| sequence length |
755
|
| chains with identical sequence |
B
|
| ec nomenclature |
ec
6.3.2.2: Glutamate--cysteine ligase. |
| pdb deposition date | 2010-02-02 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF02655 | ATP-grasp_3 | ATP-grasp domain |
| A | PF04262 | Glu_cys_ligase | Glutamate-cysteine ligase |
| A | PF18419 | ATP-grasp_6 | ATP-grasp-like domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | Creatine Kinase; Chain A, domain 2 | Creatine Kinase; Chain A, domain 2 |
#chains in the Genus database with same CATH superfamily 3NZT A; 1TT4 A; 2GWD A; 1V4G A; 2GWC A; 3LN7 A; 3LN6 A; 1VA6 A; 2D32 A; 2D33 A; 1R8G A; #chains in the Genus database with same CATH topology 1V4G A; 1BG0 A; 1HTO A; 4RF6 A; 1P50 A; 3L2E A; 2WHI A; 5J99 A; 2WGS A; 3ZXR A; 1QK1 A; 3IG8 A; 2D3A A; 2D3C A; 3LVV A; 4HPP A; 4GW2 A; 2BVC A; 1CRK A; 1LGR A; 1SD0 A; 4ACF A; 2CRK A; 4RF8 A; 1F52 A; 4S17 A; 1FPY A; 2OJW A; 1HTQ A; 4GW0 A; 2LGS A; 1VA6 A; 4LNN A; 2D32 A; 3L2D A; 4XYC A; 4LNK A; 2J1Q A; 2GLS A; 3M10 A; 3JU6 A; 2GWC A; 3JU5 A; 2UU7 A; 3LN6 A; 2D3B A; 3B6R A; 3JQ3 A; 4Z9M A; 1P52 A; 3IG5 A; 3LVW A; 4RF9 A; 3ZXV A; 3DRE A; 1F1H A; 4GVY A; 4BG4 A; 3FKY A; 3JPZ A; 4LNO A; 2QC8 A; 1QH4 A; 2GWD A; 4S0R A; 1VRP A; 4Q2R A; 4AM1 A; 1I0E A; 1U6R A; 4BG4 B; 3NG0 A; 1M15 A; 3LN7 A; 3DRB A; 4BHL A; 1TT4 A; 2D33 A; 4LNI A; 1R8G A; 4RF7 A; 3L2E B; 1G0W A; 4GVZ A; 3NZT A; 5J9A A; 4LNF A; 4BAX A; 1RL9 A; #chains in the Genus database with same CATH homology 3LN7 A; 2GWC A; 1V4G A; 2UU7 A; 1TT4 A; 3LN6 A; 2D3B A; 2OJW A; 2D33 A; 1R8G A; 3IG5 A; 3LVW A; 3NZT A; 1VA6 A; 2D32 A; 2D3A A; 3FKY A; 3IG8 A; 2D3C A; 3LVV A; 2QC8 A; 2GWD A; 4BAX A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
