The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
105
|
sequence length |
331
|
structure length |
324
|
Chain Sequence |
PKNLINIDKPIKELPASIAIPKEKPLTGEQQKMYDEVLKHFSNPDLKVYTSEKNKSEDDLKPLEEEEKAWLTRECFLRYLRATKWVLKDCIDRITMTLAWRREFGISHLGEEHGDKITADLVAVENESGKQVILGYENDARPILYLKPGRQNTKTSHRQVQHLVFMLERVIDFMPAGQDSLALLIDFKDYPDVPKVPIGVGKEVLHILQTHYPERLGKALLTNIPWLAWTFLKLIHPFIDPLTREKLVFDEPFVKYVPKNELDSLYGGDLKFKYNHDVYWPALVETAREKRDHYFKRFQSFGGIVGLSEVDLRGTHEKLLYPVK
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Lipid binding protein
|
| molecule keywords |
Phosphatidylinositol transfer protein PDR16
|
| publication title |
Dimeric Sfh3 has structural changes in its binding pocket that are associated with a dimer-monomer state transformation induced by substrate binding.
pubmed doi rcsb |
| source organism |
Saccharomyces cerevisiae
|
| total genus |
105
|
| structure length |
324
|
| sequence length |
331
|
| chains with identical sequence |
B
|
| ec nomenclature | |
| pdb deposition date | 2012-06-18 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00650 | CRAL_TRIO | CRAL/TRIO domain |
| A | PF03765 | CRAL_TRIO_N | CRAL/TRIO, N-terminal domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 3-Layer(aba) Sandwich | Phosphatidylinositol Transfer Protein Sec14p | CRAL-TRIO lipid binding domain |
#chains in the Genus database with same CATH superfamily 4J7Q A; 3P7Z A; 3PEG A; 1R5L A; 4OMJ A; 2D4Q A; 4CIZ A; 4M8Z A; 3HY5 A; 4OMK A; 1OIP A; 2E2X A; 3PG7 A; 3W67 A; 4J7P A; 1O6U A; 1OLM E; 3B7N A; 4UYB A; 3W68 A; 3HX3 A; 4TLG A; 1OLM A; 3B74 A; 3B7Q A; 1OIZ A; 3B7Z A; 4CJ6 A; 1AUA A; 4FMM A; 3Q8G A; #chains in the Genus database with same CATH topology 4J7Q A; 3P7Z A; 3PEG A; 1R5L A; 4OMJ A; 2D4Q A; 4CIZ A; 4M8Z A; 3HY5 A; 4OMK A; 1OIP A; 2E2X A; 3PG7 A; 3W67 A; 4J7P A; 1O6U A; 1OLM E; 3B7N A; 4UYB A; 3W68 A; 3HX3 A; 4TLG A; 1OLM A; 3B74 A; 3B7Q A; 1OIZ A; 3B7Z A; 4CJ6 A; 1AUA A; 4FMM A; 3Q8G A; #chains in the Genus database with same CATH homology 4J7Q A; 3P7Z A; 3PEG A; 1R5L A; 4OMJ A; 2D4Q A; 4CIZ A; 4M8Z A; 3HY5 A; 4OMK A; 1OIP A; 2E2X A; 3PG7 A; 3W67 A; 4J7P A; 1O6U A; 1OLM E; 3B7N A; 4UYB A; 3W68 A; 3HX3 A; 4TLG A; 1OLM A; 3B74 A; 3B7Q A; 1OIZ A; 3B7Z A; 4CJ6 A; 1AUA A; 4FMM A; 3Q8G A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
