The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
40
|
sequence length |
147
|
structure length |
142
|
Chain Sequence |
KDERAREILRGFKLNWMNLRDAETGKILWQGTEDLSVPGVEHEARVPKKILKCKAVSRELNFSSTEQMEKFRLEQKVYFKGQCLEEWFFEFGFVIPNSTNTWQSLIEAMMPASVLTGNVIIETKFFDDDLLVSTSRVRLFYV
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Lipid binding protein
|
| molecule keywords |
Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodie
|
| publication title |
The interplay between RPGR, PDE-delta and Arl2/3 regulate the ciliary targeting of farnesylated cargo.
pubmed doi rcsb |
| source organism |
Homo sapiens
|
| total genus |
40
|
| structure length |
142
|
| sequence length |
147
|
| ec nomenclature | |
| pdb deposition date | 2013-03-05 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| B | PF05351 | GMP_PDE_delta | GMP-PDE, delta subunit |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Distorted Sandwich | Coagulation Factor XIII; Chain A, domain 1 | GMP phosphodiesterase, delta subunit |
#chains in the Genus database with same CATH superfamily 1KSJ B; 4JHP B; 4JV6 B; 4JVF B; 4JV8 B; 4GOK C; 5L7K A; 3GQQ A; 1KSG B; 3T5I A; 4GOJ C; 4JVB B; 1KSH B; 5TB5 B; 5E80 A; 5E8F A; 3RBQ A; 5F2U A; 5TAR B; 3T5G B; #chains in the Genus database with same CATH topology 4JHP B; 4JVF B; 1KMT A; 4OY6 A; 5HNO A; 2JHX A; 5L7K A; 4FMR A; 1FSO A; 2YOX A; 1DS6 B; 3KYS A; 4ALR A; 4JVB B; 1AJW A; 5FOH A; 2JI0 A; 5E8F A; 5DQ8 A; 4ALS A; 4OY8 A; 5ACJ A; 1KSJ B; 4MAI A; 4EIR A; 2BEN A; 2YOW A; 4JV8 B; 1FT0 A; 3JUA A; 1FT3 A; 3EII A; 2R5O A; 2YOY A; 4GOJ C; 2JHT A; 5ACF A; 5EMV A; 2BEM A; 3RBQ A; 5F2U A; 5ACI A; 5TAR B; 2BXW A; 3T5G B; 3L15 A; 5FTZ A; 4GOK C; 5HNP A; 4QI8 A; 2JHZ A; 4RE1 A; 1GDF A; 3ZUD A; 4B5Q A; 2VTC A; 2XWX A; 4LN0 A; 5DQE A; 2LHS A; 5HGU A; 1KSH B; 5TB5 B; 2JHU A; 5ACG A; 5E80 A; 2JHV A; 2JHY A; 4D7V A; 1FST A; 3UAM A; 1HH4 D; 4GBO A; 1RHO A; 2YET A; 4EIS A; 4MAH A; 4D7U A; 4JV6 B; 5EMW A; 1QVY A; 3GQQ A; 4ALC A; 1KSG B; 4OY7 A; 3T5I A; 4ALT A; 3EJA A; 4F38 B; 4EIS B; 5AA7 A; 2JHW A; 5ACH A; 4ALQ A; 4A02 A; 4ALE A; 5IJU A; 1DOA B; 5FJQ A; 2JHS A; #chains in the Genus database with same CATH homology 1KSJ B; 4JHP B; 4JV6 B; 4JVF B; 4JV8 B; 4GOK C; 5L7K A; 3GQQ A; 1KSG B; 3T5I A; 4GOJ C; 4JVB B; 1KSH B; 5TB5 B; 5E80 A; 5E8F A; 3RBQ A; 5F2U A; 5TAR B; 3T5G B;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
