The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
31
|
Knots found |
|
sequence length |
107
|
structure length |
107
|
Chain Sequence |
SMLPNRMALSRQTEDQLKKLKGYTGITPNIAARLAFFRSVESEFRYSPERDSKKLDGTLVLDKITWLGETLQATELVLKMLYPQLEQKALIKAWAAHVEDGIAALRN
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Dna binding protein
|
| molecule keywords |
DNA sulfur modification protein DndE
|
| publication title |
Structural insights into DndE from Escherichia coli B7A involved in DNA phosphorothioation modification
pubmed doi rcsb |
| source organism |
Escherichia coli
|
| total genus |
31
|
| structure length |
107
|
| sequence length |
107
|
| chains with identical sequence |
B, C, D, E, F, G, H, I, J, K, L, M, N, O, P
|
| other databases |
 KnotProt 2.0: K -31
|
| ec nomenclature | |
| pdb deposition date | 2013-07-21 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant | Arc Repressor Mutant |
#chains in the Genus database with same CATH superfamily 4LRV A; #chains in the Genus database with same CATH topology 1EA4 A; 1PAR A; 2ADL A; 2HZV A; 1Q5V A; 4O4R A; 3QID A; 2RBF A; 3NAH A; 1B01 A; 1SIW A; 2CPG A; 2K29 A; 2K9I A; 2CKW A; 2GPE A; 2BNZ A; 1SH0 A; 2CAX A; 3SFG A; 1OHN A; 4QPX A; 1U9P A; 1BAZ A; 2BSQ E; 2H1O E; 3LGH A; 2BNW A; 1QTG A; 2WVE A; 4LQ9 A; 2BJ3 A; 3H87 C; 3BSN A; 3LJP A; 1SH2 A; 4NRT A; 1Q16 A; 2Q2K A; 3NAI A; 2WVB A; 2AN7 A; 2K1O A; 1IRQ A; 2JXH A; 1SH3 A; 2WK4 A; 3IR7 A; 4MJW A; 2B43 A; 4LRV A; 4HV0 A; 2WVD A; 3NO7 A; 1OG7 A; 4LQ3 A; 2JXI A; 4AAI A; 2CAJ A; 2WVF A; 3H5Y A; 3GXQ A; 2A2B A; 3UQS A; 3VEB A; 3QOQ A; 2H3A A; 3H5X A; 2JXG A; 4ME7 E; 2BJ9 A; 3NNE A; 3UPF A; 2BJ8 A; 4FXE A; 1MNT A; 3VW4 A; 2JBV A; 1P94 A; 4D8J A; 1BDV A; 1MYL A; 2KOE A; 1NLA A; 1ARQ A; 2WVC A; 2CAD A; 2BJ1 A; 1X93 A; 2AY0 A; 3G5O A; 3SFU A; 2KEL A; 2KKE A; 1MYK A; 3BSO A; 3FMT A; 1B28 A; 2CA9 A; 3UR0 A; 2UUW A; 4NRU A; 3FT7 A; 1ARR A; 3OD2 A; 2K5J A; 2BA3 A; 2BJ7 A; 2K6L A; 2HZA A; 3VEA A; 2UUT A; 1BDT A; #chains in the Genus database with same CATH homology 3G5O A; 4LQ9 A; 3SFU A; 2ADL A; 3H5Y A; 2A2B A; 2KKE A; 3UQS A; 3BSN A; 3BSO A; 4O4R A; 3LJP A; 1SH2 A; 3QID A; 4NRT A; 3NAH A; 2H3A A; 3H5X A; 1SIW A; 1Q16 A; 2Q2K A; 3UR0 A; 3NAI A; 2CKW A; 2AN7 A; 2UUW A; 3NNE A; 1SH0 A; 4NRU A; 3UPF A; 3SFG A; 1OHN A; 2JBV A; 1SH3 A; 2WK4 A; 4QPX A; 3IR7 A; 4MJW A; 2B43 A; 4LRV A; 2KOE A; 3NO7 A; 1OG7 A; 4LQ3 A; 2UUT A; 4AAI A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
