The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
50
|
sequence length |
197
|
structure length |
166
|
Chain Sequence |
KETVYISSIALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVNVVDVFAMPQSGTGVSVEAVDDVFQAKMMDMLKQTGRDQMVVGWYHSHPGFGCWLSSVDVNTQKSFEQLNSRAVAVVVDPIQSVKGKVVIDAFRLIDLNRHYYSLNIDYHKTAKETKMLMNLHKEQ
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Hydrolase
|
| molecule keywords |
26S proteasome regulatory subunit RPN8
|
| publication title |
Structure of the Rpn11-Rpn8 dimer reveals mechanisms of substrate deubiquitination during proteasomal degradation.
pubmed doi rcsb |
| source organism |
Saccharomyces cerevisiae
|
| total genus |
50
|
| structure length |
166
|
| sequence length |
197
|
| ec nomenclature |
ec
3.4.19.12: Ubiquitinyl hydrolase 1. |
| pdb deposition date | 2013-12-30 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| B | PF01398 | JAB | JAB1/Mov34/MPN/PAD-1 ubiquitin protease |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 3-Layer(aba) Sandwich | Cytidine Deaminase; domain 2 | Cytidine Deaminase, domain 2 |
#chains in the Genus database with same CATH superfamily 5M52 C; 2RPZ A; 2D5N A; 3OCQ A; 1UAQ A; 5GAO A; 4EG2 A; 4O8X B; 2OG4 A; 2P87 A; 1UX1 A; 1UX0 A; 2HVV A; 3ZPG A; 1Z3A A; 4BGD C; 5CW6 A; 2HXV A; 1RB7 A; 3OJ6 A; 4MSD A; 4LD4 A; 2B3J A; 2PW9 A; 3EX8 A; 4OCL A; 4OCM B; 3G8Q A; 4QFT A; 1VQ2 A; 1WKQ A; 1YSB A; 1R5T A; 4WIF A; 3ZPC A; 1MQ0 A; 1JTK A; 4ZD5 A; 1CTU A; 2Z3I A; 4WIG A; 2G6V A; 4KIT C; 4OCN A; 2G84 A; 3RZU A; 5C2O A; 4OCL B; 1TIY A; 2HVW A; 3R2N A; 4ILG C; 3DH1 A; 4MS7 A; 1UWZ A; 4LC5 A; 2OBC A; 2Z3H A; 4F7O A; 5DCA J; 4MSM A; 4HRW A; 2ZNR A; 2O96 A; 4LCP A; 4MSJ A; 4E0Q A; 2FR5 A; 4P9D A; 3B8F A; 4ZD4 A; 1R5X A; 4OCN B; 2O3K A; 3DMO A; 4ZFR A; 4K1R A; 4F3W A; 3E1U A; 4LCO A; 2NX8 A; 5M59 B; 2D30 A; 4ZFT A; 2O95 A; 4G3M A; 1WN6 A; 4LCN A; 4OWP A; 3SBG A; 2P8R A; 3ZEF B; 3RZV A; 2NYT A; 4O8Y A; 3MPZ A; 4I43 B; 2W4L A; 2KCQ A; 4HRQ A; 1CTT A; 3IJF X; 2Z3G A; 2QLC A; 2FR6 A; 2O7P A; 1YSD A; 1WWR A; 1AF2 A; 1WN5 A; 4O8X A; 1P6O A; 2Z3J A; 1ALN A; 2KKS A; 4LD2 A; 4P9C A; 2ZNV A; 4OWP B; 2A8N A; 4P9E A; 4D10 F; 1ZAB A; 4MSQ A; 1OX7 A; 4O8Y B; 2B3Z A; 4NQL A; 4PQT A; 4JXE A; 1OI0 A; 4OCM A; #chains in the Genus database with same CATH topology 1PL0 A; 2RPZ A; 5M52 C; 2B1G A; 2D5N A; 1ZCZ A; 1UAQ A; 3OCQ A; 5GAO A; 4EG2 A; 4O8X B; 2OG4 A; 2P87 A; 1UX1 A; 1UX0 A; 2HVV A; 3ZPG A; 1Z3A A; 4BGD C; 5CW6 A; 4J6E A; 2HXV A; 1RB7 A; 3OJ6 A; 4MSD A; 4LD4 A; 2B3J A; 2PW9 A; 3EX8 A; 4OCL A; 4OCM B; 3G8Q A; 4QFT A; 1VQ2 A; 1WKQ A; 1M9N A; 1R5T A; 1YSB A; 4WIF A; 3ZPC A; 3VX8 A; 1MQ0 A; 1JTK A; 4ZD5 A; 1CTU A; 2Z3I A; 4WIG A; 2G6V A; 4KIT C; 4OCN A; 2G84 A; 3RZU A; 5C2O A; 4OCL B; 1VK9 A; 1TIY A; 2B1I A; 2HVW A; 3R2N A; 4ILG C; 3DH1 A; 4MS7 A; 1UWZ A; 4LC5 A; 2OBC A; 2Z3H A; 4F7O A; 5DCA J; 4MSM A; 4HRW A; 2ZNR A; 2O96 A; 4LCP A; 4MSJ A; 4E0Q A; 2FR5 A; 4P9D A; 3B8F A; 4ZD4 A; 1R5X A; 4OCN B; 4GGM X; 2O3K A; 3DMO A; 4ZFR A; 4K1R A; 4F3W A; 3E1U A; 4LCO A; 2NX8 A; 5M59 B; 1P4R A; 3ZZM A; 2D30 A; 4EHI A; 1PKX A; 2O95 A; 4G3M A; 4ZFT A; 1WN6 A; 4LCN A; 4OWP A; 3SBG A; 2P8R A; 3ZEF B; 3RZV A; 2NYT A; 4O8Y A; 3MPZ A; 4I43 B; 2W4L A; 2KCQ A; 4HRQ A; 1CTT A; 3IJF X; 2Z3G A; 2QLC A; 1OZ0 A; 2FR6 A; 2O7P A; 1YSD A; 1WWR A; 1AF2 A; 3BH1 A; 1WN5 A; 4O8X A; 1P6O A; 2Z3J A; 1ALN A; 2KKS A; 4LD2 A; 4P9C A; 2ZNV A; 4OWP B; 2A8N A; 4P9E A; 4D10 F; 1G8M A; 2IU3 A; 4A1O A; 1ZAB A; 2IU0 A; 4MSQ A; 1OX7 A; 4O8Y B; 2B3Z A; 4NQL A; 4PQT A; 4JXE A; 1THZ A; 1OI0 A; 4OCM A; #chains in the Genus database with same CATH homology 5M52 C; 2RPZ A; 2D5N A; 3OCQ A; 1UAQ A; 5GAO A; 4EG2 A; 4O8X B; 2OG4 A; 2P87 A; 1UX1 A; 1UX0 A; 2HVV A; 3ZPG A; 1Z3A A; 4BGD C; 5CW6 A; 2HXV A; 1RB7 A; 3OJ6 A; 4MSD A; 4LD4 A; 2B3J A; 2PW9 A; 3EX8 A; 4OCL A; 4OCM B; 3G8Q A; 4QFT A; 1VQ2 A; 1WKQ A; 1YSB A; 1R5T A; 4WIF A; 3ZPC A; 1MQ0 A; 1JTK A; 4ZD5 A; 1CTU A; 2Z3I A; 4WIG A; 2G6V A; 4KIT C; 4OCN A; 2G84 A; 3RZU A; 5C2O A; 4OCL B; 1TIY A; 2HVW A; 3R2N A; 4ILG C; 3DH1 A; 4MS7 A; 1UWZ A; 4LC5 A; 2OBC A; 2Z3H A; 4F7O A; 5DCA J; 4MSM A; 4HRW A; 2ZNR A; 2O96 A; 4LCP A; 4MSJ A; 4E0Q A; 2FR5 A; 4P9D A; 3B8F A; 4ZD4 A; 1R5X A; 4OCN B; 2O3K A; 3DMO A; 4ZFR A; 4K1R A; 4F3W A; 3E1U A; 4LCO A; 2NX8 A; 5M59 B; 2D30 A; 4ZFT A; 2O95 A; 4G3M A; 1WN6 A; 4LCN A; 4OWP A; 3SBG A; 2P8R A; 3ZEF B; 3RZV A; 2NYT A; 4O8Y A; 3MPZ A; 4I43 B; 2W4L A; 2KCQ A; 4HRQ A; 1CTT A; 3IJF X; 2Z3G A; 2QLC A; 2FR6 A; 2O7P A; 1YSD A; 1WWR A; 1AF2 A; 1WN5 A; 4O8X A; 1P6O A; 2Z3J A; 1ALN A; 2KKS A; 4LD2 A; 4P9C A; 2ZNV A; 4OWP B; 2A8N A; 4P9E A; 4D10 F; 1ZAB A; 4MSQ A; 1OX7 A; 4O8Y B; 2B3Z A; 4NQL A; 4PQT A; 4JXE A; 1OI0 A; 4OCM A;
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