The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
39
|
sequence length |
149
|
structure length |
145
|
Chain Sequence |
LPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDNDVAEQWKTNEAQAIETARAWTRLYAMNNI
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Ligase
|
| molecule keywords |
Ubiquitin-conjugating enzyme E2 N
|
| publication title |
Activation of the Ubc13-Ub adduct by the RING domain of the TRIM5alpha retroviral restriction factor offers insight into the mechanism of molecular pattern recognition by TRIM proteins
rcsb |
| source organism |
Homo sapiens
|
| total genus |
39
|
| structure length |
145
|
| sequence length |
149
|
| ec nomenclature |
ec
2.3.2.23: E2 ubiquitin-conjugating enzyme. |
| pdb deposition date | 2014-05-27 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00179 | UQ_con | Ubiquitin-conjugating enzyme |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | Roll | Ubiquitin Conjugating Enzyme | Ubiquitin Conjugating Enzyme |
#chains in the Genus database with same CATH superfamily 1Q34 A; 4P5O G; 3UGB A; 3VON C; 2EKE A; 5JNE B; 4JUE A; 2GRN A; 2YB6 A; 1S1Q A; 2C4P A; 2FO3 A; 2EBM A; 4Q5H C; 2LXP A; 4DS2 A; 4IP3 B; 5D1L A; 1X23 A; 3PTF A; 1AYZ A; 2PX9 B; 3WE5 A; 5D0M A; 4NRG B; 3SY2 C; 3ZNI C; 1ZUO A; 2OXQ A; 1QCQ A; 2FUH A; 2R0J A; 4NRI A; 3UIP A; 2Z5D A; 3E95 C; 3RPG A; 4NR3 A; 4ONN A; 1KPP A; 3BZH A; 3E95 A; 2UCZ A; 3L1Y A; 5F6X A; 4QPL B; 5KNL C; 4II2 C; 2YZ0 A; 2KLY A; 4V3L A; 3W31 B; 2O25 C; 2GRQ A; 1U9B A; 4W5V A; 4GPR A; 3FN1 B; 4JQU A; 4V3K A; 3R42 A; 4LAD A; 2O25 A; 2GRR A; 2A4D A; 2YHO B; 2F4W A; 3R3Q A; 4Y1L C; 2KJH A; 1J7D A; 3E46 A; 4EJE A; 3OBQ A; 4Y1L A; 4ZNY A; 3HCU B; 2XWU A; 4YII U; 1C4Z D; 4AP4 B; 3EVX A; 4TKP A; 2EDI A; 2Z6P A; 5AIU B; 3OBU A; 1JAT A; 3A4S A; 4BWF A; 5FER B; 4FH1 A; 3UIN A; 1Z2U A; 2GRP A; 3KPA A; 5D1M A; 2BEP A; 5F6W A; 1Y6L A; 1FXT A; 2BF8 A; 3RZ3 A; 3UIO A; 4ONL B; 3P9H A; 1ZDN A; 3CEG A; 1W4U A; 2GMI B; 1Z3D A; 2EBK A; 2K07 A; 1KPS A; 4Q5E C; 1I7K A; 1PZV A; 3F92 A; 2C2V B; 1U9A A; 2YBF A; 4S3O A; 1WZW A; 1FBV C; 4YC1 A; 2Y4W A; 1UKX A; 3P9G A; 5HPT C; 2CLW B; 2H2Y A; 3RCZ B; 1WZV A; 2F4Z A; 4DHI D; 2DMF A; 2Y9M A; 2Z6O A; 4ONM B; 3O2U A; 5AIT B; 1JBB A; 2AAK A; 3HCT B; 5F6D A; 2DAX A; 5D2M A; 2DAW A; 2OB4 A; 2ESP A; 3A33 A; 5AIT D; 5F6Y A; 3ZQS A; 3L1Z A; 1J7D B; 4AUQ A; 1JAS A; 3SQV C; 5D0K A; 4BVU B; 2ESQ A; 4MDK A; 2DAY A; 3VON B; 2ESK A; 5F6U A; 2A7L A; 5DFL A; 2AYV A; 4X57 A; 5AIE B; 4CCG A; 4M1N A; 2MT6 A; 2GRO A; 2Q0V A; 5IFR A; 5EGG A; 1TTE A; 2AWF A; 4A4B C; 2ESO A; 5FQ2 A; 4NRI B; 1M4Q A; 2PE6 A; 2NVU C; 2E2C A; 3TGD A; 4DDG A; 1A3S A; 4NR3 B; 1Y8X A; 3JVZ A; 4ONN B; 1J74 A; 1YF9 A; 4L83 A; 3ONG B; 1ZGU A; 4LDT C; 4NRG A; 3JW0 A; 3H8K A; 1UZX A; 1YLA A; 5F6V A; 4ONL A; 4DDI A; 2F0R A; 3FSH A; 5F6E A; 2VRR A; 1YRV A; 3K9P A; 2GMI A; 1FZY A; 2C2V C; 2CYX A; 2PWQ A; 3EB6 B; 3K9O A; 5D1K A; 1KPQ A; 3OBS A; 1M4P A; 2UYZ A; 2CLW A; 2ONU A; 4DHJ C; 1Z5S A; 1JAT B; 4A4C C; 2HLW A; 2GJD A; 4ONM A; 3OBX A; 3OJ4 A; 4WZ3 A; 4R62 A; 2Y9P A; 2QGX A; 4A49 B; 4DHZ F; 1YH2 A; #chains in the Genus database with same CATH topology 1Q34 A; 4P5O G; 3UGB A; 3VON C; 2EKE A; 5JNE B; 4JUE A; 2GRN A; 2YB6 A; 1S1Q A; 2C4P A; 2FO3 A; 2EBM A; 4Q5H C; 2LXP A; 4DS2 A; 4IP3 B; 5D1L A; 1X23 A; 3PTF A; 1AYZ A; 2PX9 B; 3WE5 A; 5D0M A; 4NRG B; 3SY2 C; 3ZNI C; 1ZUO A; 2OXQ A; 1QCQ A; 2FUH A; 2R0J A; 4NRI A; 3UIP A; 2Z5D A; 3E95 C; 3RPG A; 4NR3 A; 4ONN A; 1KPP A; 3BZH A; 3E95 A; 2UCZ A; 3L1Y A; 5F6X A; 4QPL B; 5KNL C; 4II2 C; 2YZ0 A; 2KLY A; 4V3L A; 3W31 B; 2O25 C; 2GRQ A; 1U9B A; 4W5V A; 4GPR A; 3FN1 B; 4JQU A; 4V3K A; 3R42 A; 4LAD A; 2O25 A; 2GRR A; 2A4D A; 2YHO B; 2F4W A; 3R3Q A; 4Y1L C; 2KJH A; 1J7D A; 3E46 A; 4EJE A; 3OBQ A; 4Y1L A; 4ZNY A; 3HCU B; 2XWU A; 4YII U; 1C4Z D; 4AP4 B; 3EVX A; 4TKP A; 2EDI A; 2Z6P A; 5AIU B; 3OBU A; 1JAT A; 3A4S A; 4BWF A; 5FER B; 4FH1 A; 3UIN A; 1Z2U A; 2GRP A; 3KPA A; 5D1M A; 2BEP A; 5F6W A; 1Y6L A; 1FXT A; 2BF8 A; 3RZ3 A; 3UIO A; 4ONL B; 3P9H A; 1ZDN A; 3CEG A; 1W4U A; 2GMI B; 1Z3D A; 2EBK A; 2K07 A; 1KPS A; 4Q5E C; 1I7K A; 1PZV A; 3F92 A; 2C2V B; 1U9A A; 2YBF A; 4S3O A; 1WZW A; 1FBV C; 4YC1 A; 2Y4W A; 1UKX A; 3P9G A; 5HPT C; 2CLW B; 2H2Y A; 3RCZ B; 1WZV A; 2F4Z A; 4DHI D; 2DMF A; 2Y9M A; 2Z6O A; 4ONM B; 3O2U A; 5AIT B; 1JBB A; 2AAK A; 3HCT B; 5F6D A; 2DAX A; 5D2M A; 2DAW A; 2OB4 A; 2ESP A; 3A33 A; 5AIT D; 5F6Y A; 3ZQS A; 3L1Z A; 1J7D B; 4AUQ A; 1JAS A; 3SQV C; 5D0K A; 4BVU B; 2ESQ A; 4MDK A; 2DAY A; 3VON B; 2ESK A; 5F6U A; 2A7L A; 5DFL A; 2AYV A; 4X57 A; 5AIE B; 4CCG A; 4M1N A; 2MT6 A; 2GRO A; 2Q0V A; 5IFR A; 5EGG A; 1TTE A; 2AWF A; 4A4B C; 2ESO A; 5FQ2 A; 4NRI B; 1M4Q A; 2PE6 A; 2NVU C; 2E2C A; 3TGD A; 4DDG A; 1A3S A; 4NR3 B; 1Y8X A; 3JVZ A; 4ONN B; 1J74 A; 1YF9 A; 4L83 A; 3ONG B; 1ZGU A; 4LDT C; 4NRG A; 3JW0 A; 3H8K A; 1UZX A; 1YLA A; 5F6V A; 4ONL A; 4DDI A; 2F0R A; 3FSH A; 5F6E A; 2VRR A; 1YRV A; 3K9P A; 2GMI A; 1FZY A; 2C2V C; 2CYX A; 2PWQ A; 3EB6 B; 3K9O A; 5D1K A; 1KPQ A; 3OBS A; 1M4P A; 2UYZ A; 2CLW A; 2ONU A; 4DHJ C; 1Z5S A; 1JAT B; 4A4C C; 2HLW A; 2GJD A; 4ONM A; 3OBX A; 3OJ4 A; 4WZ3 A; 4R62 A; 2Y9P A; 2QGX A; 4A49 B; 4DHZ F; 1YH2 A; #chains in the Genus database with same CATH homology 1Q34 A; 4P5O G; 3UGB A; 3VON C; 2EKE A; 5JNE B; 4JUE A; 2GRN A; 2YB6 A; 1S1Q A; 2C4P A; 2FO3 A; 2EBM A; 4Q5H C; 2LXP A; 4DS2 A; 4IP3 B; 5D1L A; 1X23 A; 3PTF A; 1AYZ A; 2PX9 B; 3WE5 A; 5D0M A; 4NRG B; 3SY2 C; 3ZNI C; 1ZUO A; 2OXQ A; 1QCQ A; 2FUH A; 2R0J A; 4NRI A; 3UIP A; 2Z5D A; 3E95 C; 3RPG A; 4NR3 A; 4ONN A; 1KPP A; 3BZH A; 3E95 A; 2UCZ A; 3L1Y A; 5F6X A; 4QPL B; 5KNL C; 4II2 C; 2YZ0 A; 2KLY A; 4V3L A; 3W31 B; 2O25 C; 2GRQ A; 1U9B A; 4W5V A; 4GPR A; 3FN1 B; 4JQU A; 4V3K A; 3R42 A; 4LAD A; 2O25 A; 2GRR A; 2A4D A; 2YHO B; 2F4W A; 3R3Q A; 4Y1L C; 2KJH A; 1J7D A; 3E46 A; 4EJE A; 3OBQ A; 4Y1L A; 4ZNY A; 3HCU B; 2XWU A; 4YII U; 1C4Z D; 4AP4 B; 3EVX A; 4TKP A; 2EDI A; 2Z6P A; 5AIU B; 3OBU A; 1JAT A; 3A4S A; 4BWF A; 5FER B; 4FH1 A; 3UIN A; 1Z2U A; 2GRP A; 3KPA A; 5D1M A; 2BEP A; 5F6W A; 1Y6L A; 1FXT A; 2BF8 A; 3RZ3 A; 3UIO A; 4ONL B; 3P9H A; 1ZDN A; 3CEG A; 1W4U A; 2GMI B; 1Z3D A; 2EBK A; 2K07 A; 1KPS A; 4Q5E C; 1I7K A; 1PZV A; 3F92 A; 2C2V B; 1U9A A; 2YBF A; 4S3O A; 1WZW A; 1FBV C; 4YC1 A; 2Y4W A; 1UKX A; 3P9G A; 5HPT C; 2CLW B; 2H2Y A; 3RCZ B; 1WZV A; 2F4Z A; 4DHI D; 2DMF A; 2Y9M A; 2Z6O A; 4ONM B; 3O2U A; 5AIT B; 1JBB A; 2AAK A; 3HCT B; 5F6D A; 2DAX A; 5D2M A; 2DAW A; 2OB4 A; 2ESP A; 3A33 A; 5AIT D; 5F6Y A; 3ZQS A; 3L1Z A; 1J7D B; 4AUQ A; 1JAS A; 3SQV C; 5D0K A; 4BVU B; 2ESQ A; 4MDK A; 2DAY A; 3VON B; 2ESK A; 5F6U A; 2A7L A; 5DFL A; 2AYV A; 4X57 A; 5AIE B; 4CCG A; 4M1N A; 2MT6 A; 2GRO A; 2Q0V A; 5IFR A; 5EGG A; 1TTE A; 2AWF A; 4A4B C; 2ESO A; 5FQ2 A; 4NRI B; 1M4Q A; 2PE6 A; 2NVU C; 2E2C A; 3TGD A; 4DDG A; 1A3S A; 4NR3 B; 1Y8X A; 3JVZ A; 4ONN B; 1J74 A; 1YF9 A; 4L83 A; 3ONG B; 1ZGU A; 4LDT C; 4NRG A; 3JW0 A; 3H8K A; 1UZX A; 1YLA A; 5F6V A; 4ONL A; 4DDI A; 2F0R A; 3FSH A; 5F6E A; 2VRR A; 1YRV A; 3K9P A; 2GMI A; 1FZY A; 2C2V C; 2CYX A; 2PWQ A; 3EB6 B; 3K9O A; 5D1K A; 1KPQ A; 3OBS A; 1M4P A; 2UYZ A; 2CLW A; 2ONU A; 4DHJ C; 1Z5S A; 1JAT B; 4A4C C; 2HLW A; 2GJD A; 4ONM A; 3OBX A; 3OJ4 A; 4WZ3 A; 4R62 A; 2Y9P A; 2QGX A; 4A49 B; 4DHZ F; 1YH2 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
