4V1JA

Structure of neisseria meningitidis major pillin
Total Genus 36
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
142
structure length
141
Chain Sequence
GPMQDYTARAQVSEAILLAEGQKSAVTEYYLNHGEWPGNNTSAGVATSSEIKGKYVKSVEVKNGVVTAQMASSNVNNEIKGKKLSLWAKRQNGSVKWFCGQPVTRDKAKANDDVTAAAAANGKKIDTKHLPSTCRDASDAS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Cell adhesion
molecule keywords FIMBRIAL PROTEIN
publication title Tstructure of Neisseria Meningitidis Major Pillin
rcsb
source organism Neisseria meningitidis mc58
total genus 36
structure length 141
sequence length 142
ec nomenclature
pdb deposition date 2014-09-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00114 Pilin Pilin (bacterial filament)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.700.10 Alpha Beta 2-Layer Sandwich Glycoprotein, Type 4 Pilin Glycoprotein, Type 4 Pilin 4v1jA00
1X6QA 2KEPA 1X6RA 4LW9A 1T92A 3FU1A 1X6PA 1QVEA 1HPWA 3G20A 1AY2A 5JW8A 2PILA 1X6XX 2PY0A 3JYZA 3SOJA 3GN9A 4V1JA 1X6ZA 3JZZA 2HI2A 1DZOA 1RG0A 3SOKA 1OQWA 2M7GA 1X6YA
chains in the Genus database with same CATH superfamily
1WSCA 1X6QA 2KEPA 1X6RA 4LW9A 3U9SA 1T92A 3FU1A 1VAJA 1X6PA 1QVEA 1HPWA 2M3KA 3G20A 1AY2A 5JW8A 2PILA 1X6XX 2PY0A 3N6RA 3JYZA 3SOJA 3GN9A 4V1JA 1X6ZA 3JZZA 3U9TA 1ZQ7A 2HI2A 1DZOA 1RG0A 3SOKA 1OQWA 2M7GA 1X6YA
chains in the Genus database with same CATH topology
1X6QA 2KEPA 1X6RA 4LW9A 3U9SA 1T92A 3FU1A 1X6PA 1QVEA 1HPWA 2M3KA 3G20A 1AY2A 5JW8A 2PILA 1X6XX 2PY0A 3N6RA 3JYZA 3SOJA 3GN9A 4V1JA 1X6ZA 3JZZA 3U9TA 2HI2A 1DZOA 1RG0A 3SOKA 1OQWA 2M7GA 1X6YA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1X6Q A;  2KEP A;  1X6R A;  4LW9 A;  1T92 A;  3FU1 A;  1X6P A;  1QVE A;  1HPW A;  3G20 A;  1AY2 A;  5JW8 A;  2PIL A;  1X6X X;  2PY0 A;  3JYZ A;  3SOJ A;  3GN9 A;  4V1J A;  1X6Z A;  3JZZ A;  2HI2 A;  1DZO A;  1RG0 A;  3SOK A;  1OQW A;  2M7G A;  1X6Y A; 
#chains in the Genus database with same CATH topology
 1WSC A;  1X6Q A;  2KEP A;  1X6R A;  4LW9 A;  3U9S A;  1T92 A;  3FU1 A;  1VAJ A;  1X6P A;  1QVE A;  1HPW A;  2M3K A;  3G20 A;  1AY2 A;  5JW8 A;  2PIL A;  1X6X X;  2PY0 A;  3N6R A;  3JYZ A;  3SOJ A;  3GN9 A;  4V1J A;  1X6Z A;  3JZZ A;  3U9T A;  1ZQ7 A;  2HI2 A;  1DZO A;  1RG0 A;  3SOK A;  1OQW A;  2M7G A;  1X6Y A; 
#chains in the Genus database with same CATH homology
 1X6Q A;  2KEP A;  1X6R A;  4LW9 A;  3U9S A;  1T92 A;  3FU1 A;  1X6P A;  1QVE A;  1HPW A;  2M3K A;  3G20 A;  1AY2 A;  5JW8 A;  2PIL A;  1X6X X;  2PY0 A;  3N6R A;  3JYZ A;  3SOJ A;  3GN9 A;  4V1J A;  1X6Z A;  3JZZ A;  3U9T A;  2HI2 A;  1DZO A;  1RG0 A;  3SOK A;  1OQW A;  2M7G A;  1X6Y A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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