5JW8A

Crystal structure of the type iv pilin subunit pile from neisseria meningitidis
Total Genus 31
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
31
sequence length
133
structure length
133
Chain Sequence
ARAQVSEAILLAEGQKSAVTEYYLNHGEWPGDNSSAGVATSADIKGKYVQSVTVANGVITAQMASSNVNNEIKSKKLSLWAKRQNGSVKWFCGQPVTRTTATATDVAAANGKTDDKINTKHLPSTCRDDSSAS
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Cell adhesion
molecule keywords Major pilin PilE
publication title Structure of the Neisseria meningitidis Type IV pilus.
pubmed doi rcsb
source organism Neisseria meningitidis serogroup c
total genus 31
structure length 133
sequence length 133
ec nomenclature
pdb deposition date 2016-05-11
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.700.10 Alpha Beta 2-Layer Sandwich Glycoprotein, Type 4 Pilin Glycoprotein, Type 4 Pilin 5jw8A00
1X6XX 3SOKA 2KEPA 3JYZA 1OQWA 1AY2A 3SOJA 3G20A 1X6YA 1RG0A 3FU1A 5JW8A 1X6RA 2M7GA 1X6ZA 3JZZA 2HI2A 1X6PA 4LW9A 1HPWA 1T92A 1X6QA 3GN9A 2PY0A 1QVEA 2PILA 4V1JA 1DZOA
chains in the Genus database with same CATH superfamily
1WSCA 1X6XX 3SOKA 3U9SA 2KEPA 3JYZA 1OQWA 1AY2A 1ZQ7A 3SOJA 3G20A 1VAJA 1X6YA 1RG0A 3FU1A 5JW8A 1X6RA 2M7GA 1X6ZA 3U9TA 3JZZA 3N6RA 2HI2A 1X6PA 4LW9A 1HPWA 1T92A 1X6QA 3GN9A 2PY0A 1QVEA 2M3KA 2PILA 4V1JA 1DZOA
chains in the Genus database with same CATH topology
1X6XX 3SOKA 3U9SA 2KEPA 3JYZA 1OQWA 1AY2A 3SOJA 3G20A 1X6YA 1RG0A 3FU1A 5JW8A 1X6RA 2M7GA 1X6ZA 3U9TA 3JZZA 3N6RA 2HI2A 1X6PA 4LW9A 1HPWA 1T92A 1X6QA 3GN9A 2PY0A 1QVEA 2M3KA 2PILA 4V1JA 1DZOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1X6X X;  3SOK A;  2KEP A;  3JYZ A;  1OQW A;  1AY2 A;  3SOJ A;  3G20 A;  1X6Y A;  1RG0 A;  3FU1 A;  5JW8 A;  1X6R A;  2M7G A;  1X6Z A;  3JZZ A;  2HI2 A;  1X6P A;  4LW9 A;  1HPW A;  1T92 A;  1X6Q A;  3GN9 A;  2PY0 A;  1QVE A;  2PIL A;  4V1J A;  1DZO A; 
#chains in the Genus database with same CATH topology
 1WSC A;  1X6X X;  3SOK A;  3U9S A;  2KEP A;  3JYZ A;  1OQW A;  1AY2 A;  1ZQ7 A;  3SOJ A;  3G20 A;  1VAJ A;  1X6Y A;  1RG0 A;  3FU1 A;  5JW8 A;  1X6R A;  2M7G A;  1X6Z A;  3U9T A;  3JZZ A;  3N6R A;  2HI2 A;  1X6P A;  4LW9 A;  1HPW A;  1T92 A;  1X6Q A;  3GN9 A;  2PY0 A;  1QVE A;  2M3K A;  2PIL A;  4V1J A;  1DZO A; 
#chains in the Genus database with same CATH homology
 1X6X X;  3SOK A;  3U9S A;  2KEP A;  3JYZ A;  1OQW A;  1AY2 A;  3SOJ A;  3G20 A;  1X6Y A;  1RG0 A;  3FU1 A;  5JW8 A;  1X6R A;  2M7G A;  1X6Z A;  3U9T A;  3JZZ A;  3N6R A;  2HI2 A;  1X6P A;  4LW9 A;  1HPW A;  1T92 A;  1X6Q A;  3GN9 A;  2PY0 A;  1QVE A;  2M3K A;  2PIL A;  4V1J A;  1DZO A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...