5C8PA

Crystal structure of mocvnh3 variant (mo0v) in complex with (n-glcnac)3
Total Genus 43
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
43
sequence length
151
structure length
151
Chain Sequence
GNYAGNFSGSSRDICLDGARLRAECRRGDGGYSTSVIDLNRYLSNDNGHFRWVSTATVTVQQGDTLRDIGRRFDCDFHEIARRNNIQNEDLIYPGQVLQVGGNFWDSARDVRLVDGGKVLEAELRYSGGWNRSRIYLDEHIGNRNGELIHC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Sugar binding protein
molecule keywords MoCVNH3 variant
publication title Structural Insight into Fungal Cell Wall Recognition by a CVNH Protein with a Single LysM Domain.
pubmed doi rcsb
source organism Magnaporthe oryzae
total genus 43
structure length 151
sequence length 151
ec nomenclature
pdb deposition date 2015-06-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01476 LysM LysM domain
A PF08881 CVNH CVNH domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.60.10 Mainly Beta Roll HIV-inactivating Protein, Cyanovirin-n Cyanovirin-N 5c8pA01
3.10.350.10 Alpha Beta Roll Membrane-bound Lytic Murein Transglycosylase D; Chain A LysM domain 5c8pA02
5C8QB 3EZMA 3HNXA 2L2FA 4J4FA 3LHCA 4J4CA 2Z21A 4B9HA 1L5BA 3HP8A 3GXYA 4PXVA 1LOMA 5K2LA 2DJPA 2EZNA 2RDKA 4B8VA 4J4EA 4A52A 4A1IA 2Y1SA 3GXZA 5C8PA 3HNUX 5C8OA 5BUMA 2EZMA 3S3YA 2PYSA 2JZKA 2MTZA 1Y7MA 2MKXA 2RP3A 2JZJA 1N02A 3CZZA 3ZQDA 1J4VA 2KJLA 3S3ZA 2YHHA 2L9YA 1IIYA 2LTFA 2JZLA 1L5EA 4A1JA 4A1KA 1E0GA
chains in the Genus database with same CATH superfamily
5C8QB 3EZMA 3HNXA 2L2FA 4J4FA 3LHCA 4J4CA 2Z21A 4B9HA 1L5BA 3HP8A 3GXYA 4PXVA 1LOMA 5K2LA 2DJPA 2EZNA 2RDKA 4B8VA 4J4EA 4A52A 4A1IA 2Y1SA 3GXZA 5C8PA 3HNUX 5C8OA 5BUMA 2EZMA 3S3YA 2PYSA 2JZKA 2MTZA 1Y7MA 2MKXA 2RP3A 2JZJA 1N02A 3CZZA 3ZQDA 1J4VA 2KJLA 3S3ZA 2YHHA 2L9YA 1IIYA 2LTFA 2JZLA 1L5EA 4A1JA 4A1KA 1E0GA
chains in the Genus database with same CATH topology
5C8QB 3EZMA 3HNXA 2L2FA 4J4FA 3LHCA 4J4CA 2Z21A 4B9HA 1L5BA 3HP8A 3GXYA 4PXVA 1LOMA 5K2LA 2DJPA 2EZNA 2RDKA 4B8VA 4J4EA 4A52A 4A1IA 2Y1SA 3GXZA 5C8PA 3HNUX 5C8OA 5BUMA 2EZMA 3S3YA 2PYSA 2JZKA 2MTZA 1Y7MA 2MKXA 2RP3A 2JZJA 1N02A 3CZZA 3ZQDA 1J4VA 2KJLA 3S3ZA 2YHHA 2L9YA 1IIYA 2LTFA 2JZLA 1L5EA 4A1JA 4A1KA 1E0GA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5C8Q B;  3EZM A;  3HNX A;  2L2F A;  4J4F A;  3LHC A;  4J4C A;  2Z21 A;  4B9H A;  1L5B A;  3HP8 A;  3GXY A;  4PXV A;  1LOM A;  5K2L A;  2DJP A;  2EZN A;  2RDK A;  4B8V A;  4J4E A;  4A52 A;  4A1I A;  2Y1S A;  3GXZ A;  5C8P A;  3HNU X;  5C8O A;  5BUM A;  2EZM A;  3S3Y A;  2PYS A;  2JZK A;  2MTZ A;  1Y7M A;  2MKX A;  2RP3 A;  2JZJ A;  1N02 A;  3CZZ A;  3ZQD A;  1J4V A;  2KJL A;  3S3Z A;  2YHH A;  2L9Y A;  1IIY A;  2LTF A;  2JZL A;  1L5E A;  4A1J A;  4A1K A;  1E0G A; 
#chains in the Genus database with same CATH topology
 5C8Q B;  3EZM A;  3HNX A;  2L2F A;  4J4F A;  3LHC A;  4J4C A;  2Z21 A;  4B9H A;  1L5B A;  3HP8 A;  3GXY A;  4PXV A;  1LOM A;  5K2L A;  2DJP A;  2EZN A;  2RDK A;  4B8V A;  4J4E A;  4A52 A;  4A1I A;  2Y1S A;  3GXZ A;  5C8P A;  3HNU X;  5C8O A;  5BUM A;  2EZM A;  3S3Y A;  2PYS A;  2JZK A;  2MTZ A;  1Y7M A;  2MKX A;  2RP3 A;  2JZJ A;  1N02 A;  3CZZ A;  3ZQD A;  1J4V A;  2KJL A;  3S3Z A;  2YHH A;  2L9Y A;  1IIY A;  2LTF A;  2JZL A;  1L5E A;  4A1J A;  4A1K A;  1E0G A; 
#chains in the Genus database with same CATH homology
 5C8Q B;  3EZM A;  3HNX A;  2L2F A;  4J4F A;  3LHC A;  4J4C A;  2Z21 A;  4B9H A;  1L5B A;  3HP8 A;  3GXY A;  4PXV A;  1LOM A;  5K2L A;  2DJP A;  2EZN A;  2RDK A;  4B8V A;  4J4E A;  4A52 A;  4A1I A;  2Y1S A;  3GXZ A;  5C8P A;  3HNU X;  5C8O A;  5BUM A;  2EZM A;  3S3Y A;  2PYS A;  2JZK A;  2MTZ A;  1Y7M A;  2MKX A;  2RP3 A;  2JZJ A;  1N02 A;  3CZZ A;  3ZQD A;  1J4V A;  2KJL A;  3S3Z A;  2YHH A;  2L9Y A;  1IIY A;  2LTF A;  2JZL A;  1L5E A;  4A1J A;  4A1K A;  1E0G A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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