5D0QE

Bamacde complex, outer membrane beta-barrel assembly machinery (bam) complex
Total Genus 11
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
11
sequence length
87
structure length
87
Chain Sequence
ERVVYRPDINQGNYLTANDVSKIRVGMTQQQVAYALGTPLMSDPFGTNTWFYVFRQQPGHEGVTQQTLTLTFNSSGVLTNIDNKPAL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Protein transport
molecule keywords Outer membrane protein assembly factor BamA
publication title Structural basis of outer membrane protein insertion by the BAM complex.
pubmed doi rcsb
source organism Escherichia coli k-12
total genus 11
structure length 87
sequence length 87
chains with identical sequence I
ec nomenclature
pdb deposition date 2015-08-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
E PF04355 SmpA_OmlA SmpA / OmlA family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1450.10 Alpha Beta 2-Layer Sandwich Beta-lactamase Inhibitory Protein; Chain:B, domain 1 Beta-lactamase Inhibitory Protein; Chain:B, domain 1 5d0qE01
2KM7A 5AYWE 2PXGA 5D0QE 3C7VB 3N4IB 3E2KC 3C7UB 2B5RC 3E2LC 3D4EA 5D0OE 1JTGB 5EKQE 1S0WC 3C4PB 3GMUB 1XXMC 2YH9A 3C4OB 2KXXA 2G2WB 2G2UB 4DM5A
chains in the Genus database with same CATH superfamily
2KM7A 3FVCA 5AYWE 2PXGA 5D0QE 3NW8A 3C7VB 3N4IB 3E2KC 3C7UB 4L1RA 2B5RC 3E2LC 3D4EA 5D0OE 1JTGB 4HSIA 5EKQE 1S0WC 3C4PB 3GMUB 1XXMC 2YH9A 3C4OB 3NWDA 2KXXA 3NWAA 2G2WB 2GUMA 2G2UB 4DM5A 3NWFA
chains in the Genus database with same CATH topology
2KM7A 3FVCA 5AYWE 2PXGA 5D0QE 3NW8A 3C7VB 3N4IB 3E2KC 3C7UB 4L1RA 2B5RC 3E2LC 3D4EA 5D0OE 1JTGB 4HSIA 5EKQE 1S0WC 3C4PB 3GMUB 1XXMC 2YH9A 3C4OB 3NWDA 2KXXA 3NWAA 2G2WB 2GUMA 2G2UB 4DM5A 3NWFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2KM7 A;  5AYW E;  2PXG A;  5D0Q E;  3C7V B;  3N4I B;  3E2K C;  3C7U B;  2B5R C;  3E2L C;  3D4E A;  5D0O E;  1JTG B;  5EKQ E;  1S0W C;  3C4P B;  3GMU B;  1XXM C;  2YH9 A;  3C4O B;  2KXX A;  2G2W B;  2G2U B;  4DM5 A; 
#chains in the Genus database with same CATH topology
 2KM7 A;  3FVC A;  5AYW E;  2PXG A;  5D0Q E;  3NW8 A;  3C7V B;  3N4I B;  3E2K C;  3C7U B;  4L1R A;  2B5R C;  3E2L C;  3D4E A;  5D0O E;  1JTG B;  4HSI A;  5EKQ E;  1S0W C;  3C4P B;  3GMU B;  1XXM C;  2YH9 A;  3C4O B;  3NWD A;  2KXX A;  3NWA A;  2G2W B;  2GUM A;  2G2U B;  4DM5 A;  3NWF A; 
#chains in the Genus database with same CATH homology
 2KM7 A;  3FVC A;  5AYW E;  2PXG A;  5D0Q E;  3NW8 A;  3C7V B;  3N4I B;  3E2K C;  3C7U B;  4L1R A;  2B5R C;  3E2L C;  3D4E A;  5D0O E;  1JTG B;  4HSI A;  5EKQ E;  1S0W C;  3C4P B;  3GMU B;  1XXM C;  2YH9 A;  3C4O B;  3NWD A;  2KXX A;  3NWA A;  2G2W B;  2GUM A;  2G2U B;  4DM5 A;  3NWF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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