1E6VC

Methyl-coenzyme m reductase from methanopyrus kandleri
Total Genus 69
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
69
sequence length
248
structure length
248
Chain Sequence
FYYPGETDVAENRRKYMNPNYELKKLREIPDEDIVRLMGHREPGEEYPSVHPPLEEMEEPECPIRELVEPTEGAKAGDRIRYIQFTDSVYFAPIHPYIRARMYMWRYRGVDTGSLSGRQIIEVRERDLEKIAKELLETEIFDPARSGVRGATVHGHALRLDENGLMLHALRRYRLNEETGEVEYVKDQVGIELDEPIPVGAPADEDDLKERTTIYRIDGTPYREDEELLQVVQRIHELRTLAGYRPEE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords METHYL-COENZYME M REDUCTASE I ALPHA SUBUNIT
publication title Comparison of Three Methyl-Coenzyme M Reductases from Phylogenetically Distant Organisms: Unusual Amino Acid Modification, Conservation and Adaptation
pubmed doi rcsb
total genus 69
structure length 248
sequence length 248
chains with identical sequence F
ec nomenclature
pdb deposition date 2000-08-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF02240 MCR_gamma Methyl-coenzyme M reductase gamma subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.320.20 Alpha Beta Alpha-Beta Complex Lambda Exonuclease; Chain A Methyl-coenzyme M reductase, gamma subunit 1e6vC00
1MROC 1HBUC 5G0RC 1E6VC 3POTC 3M1VC 5A8RC 3M30C 5A0YC 3SQGC 1HBMC 3M32C 3M2UC 1HBOC 1E6YC 5A8KC 5A8WC 1HBNC 3M2VC 3M2RC
chains in the Genus database with same CATH superfamily
1MROC 3U4QA 1HBUC 5G0RC 4CEJA 1E6VC 4R5QA 1W36B 3SM4A 3POTC 3M1VC 4CEHA 5A8RC 3SZ4A 3M30C 5A0YC 3SYYA 3SQGC 1HBMC 3M32C 1AVQA 3M2UC 3K70B 1HBOC 4IC1A 4WUZA 1E6YC 5A8KC 1HBNC 5A8WC 4CEIA 3L0AA 5LD2B 3SLPA 3H4RA 3U44A 3SZ5A 3M2VC 3M2RC 3K93A
chains in the Genus database with same CATH topology
1MROC 1HBUC 5G0RC 1E6VC 3POTC 3M1VC 5A8RC 3M30C 5A0YC 3SQGC 1HBMC 3M32C 3M2UC 1HBOC 1E6YC 5A8KC 5A8WC 1HBNC 3M2VC 3M2RC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1MRO C;  1HBU C;  5G0R C;  1E6V C;  3POT C;  3M1V C;  5A8R C;  3M30 C;  5A0Y C;  3SQG C;  1HBM C;  3M32 C;  3M2U C;  1HBO C;  1E6Y C;  5A8K C;  5A8W C;  1HBN C;  3M2V C;  3M2R C; 
#chains in the Genus database with same CATH topology
 1MRO C;  3U4Q A;  1HBU C;  5G0R C;  4CEJ A;  1E6V C;  4R5Q A;  1W36 B;  3SM4 A;  3POT C;  3M1V C;  4CEH A;  5A8R C;  3SZ4 A;  3M30 C;  5A0Y C;  3SYY A;  3SQG C;  1HBM C;  3M32 C;  1AVQ A;  3M2U C;  3K70 B;  1HBO C;  4IC1 A;  4WUZ A;  1E6Y C;  5A8K C;  1HBN C;  5A8W C;  4CEI A;  3L0A A;  5LD2 B;  3SLP A;  3H4R A;  3U44 A;  3SZ5 A;  3M2V C;  3M2R C;  3K93 A; 
#chains in the Genus database with same CATH homology
 1MRO C;  1HBU C;  5G0R C;  1E6V C;  3POT C;  3M1V C;  5A8R C;  3M30 C;  5A0Y C;  3SQG C;  1HBM C;  3M32 C;  3M2U C;  1HBO C;  1E6Y C;  5A8K C;  5A8W C;  1HBN C;  3M2V C;  3M2R C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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