The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
80
|
sequence length |
247
|
structure length |
247
|
Chain Sequence |
AQYYPGTTKVAQNRRNFCNPEYELEKLREISDEDVVKILGHRAPGEEYPSVHPPLEEMDEPEDAIREMVEPIDGAKAGDRVRYIQFTDSMYFAPAQPYVRSRAYLCRYRGADAGTLSGRQIIETRERDLEKISKELLETEFFDPARSGVRGKSVHGHSLRLDEDGMMFDMLRRQIYNKDTGRVEMVKNQIGDELDEPVDLGEPLDEETLMEKTTIYRVDGEAYRDDVEAVEIMQRIHVLRSQGGFNL
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Methanogenesis
|
| molecule keywords |
METHYL-COENZYME M REDUCTASE I ALPHA SUBUNIT
|
| publication title |
On the Mechanism of Biological Methane Formation: Structural Evidence for Conformational Changes in Methyl-Coenzyme M Reductase Upon Substrate Binding
pubmed doi rcsb |
| total genus |
80
|
| structure length |
247
|
| sequence length |
247
|
| chains with identical sequence |
F
|
| ec nomenclature |
ec
2.8.4.1: Coenzyme-B sulfoethylthiotransferase. |
| pdb deposition date | 2001-04-20 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| C | PF02240 | MCR_gamma | Methyl-coenzyme M reductase gamma subunit |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | Alpha-Beta Complex | Lambda Exonuclease; Chain A | Methyl-coenzyme M reductase, gamma subunit |
#chains in the Genus database with same CATH superfamily 3SQG C; 3M2U C; 5A8R C; 3M2V C; 5A8W C; 1HBO C; 3M32 C; 5G0R C; 3POT C; 5A8K C; 3M30 C; 1E6V C; 3M1V C; 5A0Y C; 1HBM C; 1E6Y C; 1HBU C; 1MRO C; 3M2R C; 1HBN C; #chains in the Genus database with same CATH topology 3SQG C; 3U4Q A; 4WUZ A; 3M2U C; 5A8R C; 3SZ4 A; 4CEI A; 3K93 A; 3L0A A; 3SYY A; 3M2V C; 3SLP A; 4IC1 A; 1HBO C; 5A8W C; 3SM4 A; 3M32 C; 5G0R C; 3K70 B; 3SZ5 A; 3POT C; 5A8K C; 4CEH A; 3M30 C; 1E6V C; 4R5Q A; 3M1V C; 5A0Y C; 5LD2 B; 1W36 B; 1AVQ A; 1HBM C; 1E6Y C; 4CEJ A; 1HBU C; 3U44 A; 1MRO C; 3M2R C; 1HBN C; 3H4R A; #chains in the Genus database with same CATH homology 3SQG C; 3M2U C; 5A8R C; 3M2V C; 5A8W C; 1HBO C; 3M32 C; 5G0R C; 3POT C; 5A8K C; 3M30 C; 1E6V C; 3M1V C; 5A0Y C; 1HBM C; 1E6Y C; 1HBU C; 1MRO C; 3M2R C; 1HBN C;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
