1M59A

Crystal structure of p40v mutant of trypsin-solubilized fragment of cytochrome b5
Total Genus 23
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
23
sequence length
82
structure length
82
Chain Sequence
AVKYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHVGGEEVLREQAGGDATENFEDVGHSTDARELSKTFIIGELHPDDR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Electron transport
molecule keywords Cytochrome b5
publication title Proline40 is essential to maintaining cytochrome b5 stability and its electron transfer with cytochrome c
pubmed rcsb
source organism Bos taurus
total genus 23
structure length 82
sequence length 82
ec nomenclature
pdb deposition date 2002-07-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00173 Cyt-b5 Cytochrome b5-like Heme/Steroid binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.120.10 Alpha Beta Roll Flavocytochrome B2; Chain A, domain 1 Cytochrome b5-like heme/steroid binding domain 1m59A00
2M33A 1M20A 1T0GA 1I87A 1HKOA 3MUSA 1LQXA 4X8YA 1IETA 4B8NA 1LDCA 1JEXA 1I8CA 1EUEA 2AXXA 1BFXA 1DO9A 1B5MA 1AWPA 1CYOA 1NX7A 1SH4A 3OZZB 1AXXA 1AQAA 1B5BA 1IEUA 2I89A 1LJ0A 1F03A 3KS0A 1LR6A 1F04A 1M2MA 2I96A 2IBJA 1J03A 1B5AA 1AW3A 1EHBA 1SOXA 1MNYA 2KEOA 1BLVA 1CXYA 1FCBA 1KBIA 1ES1A 1MJ4A 1M59A 1I5UA 1M2IA 3NERA 3X34A 1ICCA 1LTDA 2OZ0A 4HINA 3X32A 3X33A 1U9UA 3X35A 1LCOA 1X3XA 4HILA 1U9MA 3LF5A 1J0QA 1IB7A
chains in the Genus database with same CATH superfamily
2M33A 1M20A 1T0GA 1I87A 1HKOA 3MUSA 1LQXA 4X8YA 1IETA 4B8NA 1LDCA 1JEXA 1I8CA 1EUEA 2AXXA 1BFXA 1DO9A 1B5MA 1AWPA 1CYOA 1NX7A 1SH4A 3OZZB 1AXXA 1AQAA 1B5BA 1IEUA 2I89A 1LJ0A 1F03A 3KS0A 1LR6A 1F04A 1M2MA 2I96A 2IBJA 1J03A 1B5AA 1AW3A 1EHBA 1SOXA 1MNYA 2KEOA 1BLVA 1CXYA 1FCBA 1KBIA 1ES1A 1MJ4A 1M59A 1I5UA 1M2IA 3NERA 3X34A 1ICCA 1LTDA 2OZ0A 4HINA 3X32A 3X33A 1U9UA 3X35A 1LCOA 1X3XA 4HILA 1U9MA 3LF5A 1J0QA 1IB7A
chains in the Genus database with same CATH topology
2M33A 1M20A 1T0GA 1I87A 1HKOA 3MUSA 1LQXA 4X8YA 1IETA 4B8NA 1LDCA 1JEXA 1I8CA 1EUEA 2AXXA 1BFXA 1DO9A 1B5MA 1AWPA 1CYOA 1NX7A 1SH4A 3OZZB 1AXXA 1AQAA 1B5BA 1IEUA 2I89A 1LJ0A 1F03A 3KS0A 1LR6A 1F04A 1M2MA 2I96A 2IBJA 1J03A 1B5AA 1AW3A 1EHBA 1SOXA 1MNYA 2KEOA 1BLVA 1CXYA 1FCBA 1KBIA 1ES1A 1MJ4A 1M59A 1I5UA 1M2IA 3NERA 3X34A 1ICCA 1LTDA 2OZ0A 4HINA 3X32A 3X33A 1U9UA 3X35A 1LCOA 1X3XA 4HILA 1U9MA 3LF5A 1J0QA 1IB7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2M33 A;  1M20 A;  1T0G A;  1I87 A;  1HKO A;  3MUS A;  1LQX A;  4X8Y A;  1IET A;  4B8N A;  1LDC A;  1JEX A;  1I8C A;  1EUE A;  2AXX A;  1BFX A;  1DO9 A;  1B5M A;  1AWP A;  1CYO A;  1NX7 A;  1SH4 A;  3OZZ B;  1AXX A;  1AQA A;  1B5B A;  1IEU A;  2I89 A;  1LJ0 A;  1F03 A;  3KS0 A;  1LR6 A;  1F04 A;  1M2M A;  2I96 A;  2IBJ A;  1J03 A;  1B5A A;  1AW3 A;  1EHB A;  1SOX A;  1MNY A;  2KEO A;  1BLV A;  1CXY A;  1FCB A;  1KBI A;  1ES1 A;  1MJ4 A;  1M59 A;  1I5U A;  1M2I A;  3NER A;  3X34 A;  1ICC A;  1LTD A;  2OZ0 A;  4HIN A;  3X32 A;  3X33 A;  1U9U A;  3X35 A;  1LCO A;  1X3X A;  4HIL A;  1U9M A;  3LF5 A;  1J0Q A;  1IB7 A; 
#chains in the Genus database with same CATH topology
 2M33 A;  1M20 A;  1T0G A;  1I87 A;  1HKO A;  3MUS A;  1LQX A;  4X8Y A;  1IET A;  4B8N A;  1LDC A;  1JEX A;  1I8C A;  1EUE A;  2AXX A;  1BFX A;  1DO9 A;  1B5M A;  1AWP A;  1CYO A;  1NX7 A;  1SH4 A;  3OZZ B;  1AXX A;  1AQA A;  1B5B A;  1IEU A;  2I89 A;  1LJ0 A;  1F03 A;  3KS0 A;  1LR6 A;  1F04 A;  1M2M A;  2I96 A;  2IBJ A;  1J03 A;  1B5A A;  1AW3 A;  1EHB A;  1SOX A;  1MNY A;  2KEO A;  1BLV A;  1CXY A;  1FCB A;  1KBI A;  1ES1 A;  1MJ4 A;  1M59 A;  1I5U A;  1M2I A;  3NER A;  3X34 A;  1ICC A;  1LTD A;  2OZ0 A;  4HIN A;  3X32 A;  3X33 A;  1U9U A;  3X35 A;  1LCO A;  1X3X A;  4HIL A;  1U9M A;  3LF5 A;  1J0Q A;  1IB7 A; 
#chains in the Genus database with same CATH homology
 2M33 A;  1M20 A;  1T0G A;  1I87 A;  1HKO A;  3MUS A;  1LQX A;  4X8Y A;  1IET A;  4B8N A;  1LDC A;  1JEX A;  1I8C A;  1EUE A;  2AXX A;  1BFX A;  1DO9 A;  1B5M A;  1AWP A;  1CYO A;  1NX7 A;  1SH4 A;  3OZZ B;  1AXX A;  1AQA A;  1B5B A;  1IEU A;  2I89 A;  1LJ0 A;  1F03 A;  3KS0 A;  1LR6 A;  1F04 A;  1M2M A;  2I96 A;  2IBJ A;  1J03 A;  1B5A A;  1AW3 A;  1EHB A;  1SOX A;  1MNY A;  2KEO A;  1BLV A;  1CXY A;  1FCB A;  1KBI A;  1ES1 A;  1MJ4 A;  1M59 A;  1I5U A;  1M2I A;  3NER A;  3X34 A;  1ICC A;  1LTD A;  2OZ0 A;  4HIN A;  3X32 A;  3X33 A;  1U9U A;  3X35 A;  1LCO A;  1X3X A;  4HIL A;  1U9M A;  3LF5 A;  1J0Q A;  1IB7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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