The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
27
|
sequence length |
90
|
structure length |
90
|
Chain Sequence |
QGSDPAVTYYRLEEVAKHNTSESTWMVLHGRVYDLTRFLSEHPGGEEVLREQAGADATESFEDVGHSPDAREMSKQYYIGDVHPNDLKPK
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Electron transport
|
| molecule keywords |
Cytochrome b5 type B
|
| publication title |
A histidine/tryptophan pi-stacking interaction stabilizes the heme-independent folding core of microsomal apocytochrome b5 relative to that of mitochondrial apocytochrome b5.
pubmed doi rcsb |
| source organism |
Rattus norvegicus
|
| total genus |
27
|
| structure length |
90
|
| sequence length |
90
|
| chains with identical sequence |
B, C, D
|
| ec nomenclature | |
| pdb deposition date | 2006-09-01 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00173 | Cyt-b5 | Cytochrome b5-like Heme/Steroid binding domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | Roll | Flavocytochrome B2; Chain A, domain 1 | Cytochrome b5-like heme/steroid binding domain |
#chains in the Genus database with same CATH superfamily 1MJ4 A; 3NER A; 4HIN A; 1AQA A; 1B5M A; 1LR6 A; 2I89 A; 2OZ0 A; 3OZZ B; 1BFX A; 1CXY A; 1I5U A; 1T0G A; 3KS0 A; 1M2I A; 1B5A A; 1M20 A; 1X3X A; 3MUS A; 1FCB A; 4X8Y A; 2IBJ A; 1AWP A; 1ICC A; 1JEX A; 1IB7 A; 1DO9 A; 1J03 A; 1IEU A; 2I96 A; 4B8N A; 1NX7 A; 1AW3 A; 1AXX A; 3X35 A; 1LTD A; 1LJ0 A; 1F04 A; 2M33 A; 1HKO A; 1I87 A; 1LDC A; 1LQX A; 1U9M A; 1EUE A; 1EHB A; 1KBI A; 1CYO A; 1LCO A; 1SH4 A; 1BLV A; 1SOX A; 1U9U A; 1ES1 A; 2AXX A; 2KEO A; 1J0Q A; 1IET A; 1M2M A; 4HIL A; 3X34 A; 1B5B A; 1I8C A; 3LF5 A; 3X33 A; 1F03 A; 1MNY A; 3X32 A; 1M59 A; #chains in the Genus database with same CATH topology 1MJ4 A; 3NER A; 4HIN A; 1AQA A; 1B5M A; 1LR6 A; 2I89 A; 2OZ0 A; 3OZZ B; 1BFX A; 1CXY A; 1I5U A; 1T0G A; 3KS0 A; 1M2I A; 1B5A A; 1M20 A; 1X3X A; 3MUS A; 1FCB A; 4X8Y A; 2IBJ A; 1AWP A; 1ICC A; 1JEX A; 1IB7 A; 1DO9 A; 1J03 A; 1IEU A; 2I96 A; 4B8N A; 1NX7 A; 1AW3 A; 1AXX A; 3X35 A; 1LTD A; 1LJ0 A; 1F04 A; 2M33 A; 1HKO A; 1I87 A; 1LDC A; 1LQX A; 1U9M A; 1EUE A; 1EHB A; 1KBI A; 1CYO A; 1LCO A; 1SH4 A; 1BLV A; 1SOX A; 1U9U A; 1ES1 A; 2AXX A; 2KEO A; 1J0Q A; 1IET A; 1M2M A; 4HIL A; 3X34 A; 1B5B A; 1I8C A; 3LF5 A; 3X33 A; 1F03 A; 1MNY A; 3X32 A; 1M59 A; #chains in the Genus database with same CATH homology 1MJ4 A; 3NER A; 4HIN A; 1AQA A; 1B5M A; 1LR6 A; 2I89 A; 2OZ0 A; 3OZZ B; 1BFX A; 1CXY A; 1I5U A; 1T0G A; 3KS0 A; 1M2I A; 1B5A A; 1M20 A; 1X3X A; 3MUS A; 1FCB A; 4X8Y A; 2IBJ A; 1AWP A; 1ICC A; 1JEX A; 1IB7 A; 1DO9 A; 1J03 A; 1IEU A; 2I96 A; 4B8N A; 1NX7 A; 1AW3 A; 1AXX A; 3X35 A; 1LTD A; 1LJ0 A; 1F04 A; 2M33 A; 1HKO A; 1I87 A; 1LDC A; 1LQX A; 1U9M A; 1EUE A; 1EHB A; 1KBI A; 1CYO A; 1LCO A; 1SH4 A; 1BLV A; 1SOX A; 1U9U A; 1ES1 A; 2AXX A; 2KEO A; 1J0Q A; 1IET A; 1M2M A; 4HIL A; 3X34 A; 1B5B A; 1I8C A; 3LF5 A; 3X33 A; 1F03 A; 1MNY A; 3X32 A; 1M59 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
