1MPZA

Nmr solution structure of native viperidae lebetina obtusa protein
Total Genus 3
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
3
sequence length
41
structure length
41
Chain Sequence
CTTGPCCRQCKLKPAGTTCWKTSLTSHYCTGKSCDCPLYPG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
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molecule tags Hydrolase
molecule keywords Obtustatin
publication title NMR Solution Structure of the Non-RGD Disintegrin Obtustatin
pubmed doi rcsb
total genus 3
structure length 41
sequence length 41
ec nomenclature
pdb deposition date 2002-09-13
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.70.10 Few Secondary Structures Irregular Echistatin Disintegrin domain 1mpzA00
1Q7IA 2M7FA 2W9VA 3G5CA 1L3XA 2W9OA 1RMRA 2W9UA 3C05A 2M7HA 2PJFA 4R5RA 1TEJA 2MP51 2PJIA 1J2LA 1N4YA 2ECHA 2W9WA 1Z1XA 1RO3A 2M75A 1FVLA 3UCIA 2MOP1 4R5UA 4RQGA 2LJVA 1MPZA 3C05B 1Q7JA 4M4CA 2PJGA 1TEJB
chains in the Genus database with same CATH superfamily
1Q7IA 2M7FA 2W9VA 3G5CA 1L3XA 2W9OA 1RMRA 2W9UA 3C05A 2M7HA 2PJFA 4R5RA 1TEJA 2MP51 2PJIA 1J2LA 1N4YA 2ECHA 2W9WA 1Z1XA 1RO3A 2M75A 1FVLA 3UCIA 2MOP1 4R5UA 4RQGA 2LJVA 1MPZA 3C05B 1Q7JA 4M4CA 2PJGA 1TEJB
chains in the Genus database with same CATH topology
1Q7IA 2M7FA 2W9VA 3G5CA 1L3XA 2W9OA 1RMRA 2W9UA 3C05A 2M7HA 2PJFA 4R5RA 1TEJA 2MP51 2PJIA 1J2LA 1N4YA 2ECHA 2W9WA 1Z1XA 1RO3A 2M75A 1FVLA 3UCIA 2MOP1 4R5UA 4RQGA 2LJVA 1MPZA 3C05B 1Q7JA 4M4CA 2PJGA 1TEJB
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 1Q7I A;  2M7F A;  2W9V A;  3G5C A;  1L3X A;  2W9O A;  1RMR A;  2W9U A;  3C05 A;  2M7H A;  2PJF A;  4R5R A;  1TEJ A;  2MP5 1;  2PJI A;  1J2L A;  1N4Y A;  2ECH A;  2W9W A;  1Z1X A;  1RO3 A;  2M75 A;  1FVL A;  3UCI A;  2MOP 1;  4R5U A;  4RQG A;  2LJV A;  1MPZ A;  3C05 B;  1Q7J A;  4M4C A;  2PJG A;  1TEJ B; 
#chains in the Genus database with same CATH topology
 1Q7I A;  2M7F A;  2W9V A;  3G5C A;  1L3X A;  2W9O A;  1RMR A;  2W9U A;  3C05 A;  2M7H A;  2PJF A;  4R5R A;  1TEJ A;  2MP5 1;  2PJI A;  1J2L A;  1N4Y A;  2ECH A;  2W9W A;  1Z1X A;  1RO3 A;  2M75 A;  1FVL A;  3UCI A;  2MOP 1;  4R5U A;  4RQG A;  2LJV A;  1MPZ A;  3C05 B;  1Q7J A;  4M4C A;  2PJG A;  1TEJ B; 
#chains in the Genus database with same CATH homology
 1Q7I A;  2M7F A;  2W9V A;  3G5C A;  1L3X A;  2W9O A;  1RMR A;  2W9U A;  3C05 A;  2M7H A;  2PJF A;  4R5R A;  1TEJ A;  2MP5 1;  2PJI A;  1J2L A;  1N4Y A;  2ECH A;  2W9W A;  1Z1X A;  1RO3 A;  2M75 A;  1FVL A;  3UCI A;  2MOP 1;  4R5U A;  4RQG A;  2LJV A;  1MPZ A;  3C05 B;  1Q7J A;  4M4C A;  2PJG A;  1TEJ B;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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