The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
98
|
sequence length |
237
|
structure length |
237
|
Chain Sequence |
GPLGSALEIAEQLTLLDHLVFKSIPYEEFFGQGWMKAEKYERTPYIMKTTKHFNHVSNFIASEIIRNEDISARASAIEKWVAVADICRCLHNYNAVLEITSSINRSAIFRLKKTWLKVSKQTKSLLDKLQKLVSSDGRFKNLRESLRNCDPPCVPYLGMYLTDLVFIEEGTPNYTEDGLVNFSKMRMISHIIREIRQFQQTTYKIDPQPKVIQYLLDESFMLDEESLYESSLLIEPK
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Signaling protein
|
| molecule keywords |
Guanine nucleotide-releasing protein
|
| publication title |
A Ras-induced conformational switch in the Ras activator Son of sevenless.
pubmed doi rcsb |
| source organism |
Mus musculus
|
| total genus |
98
|
| structure length |
237
|
| sequence length |
237
|
| ec nomenclature | |
| pdb deposition date | 2006-09-29 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| S | PF00617 | RasGEF | RasGEF domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | Son of Sevenless (SoS) protein; Chain S, domain 2 | Ras guanine-nucleotide exchange factors catalytic domain |
#chains in the Genus database with same CATH superfamily 3T6A A; 3KSY A; 4MH0 E; 4NYJ S; 4URV S; 3CF6 E; 4NYI S; 4URY S; 4MGZ E; 1NVX S; 1BKD S; 3QXL A; 1NVV S; 4US0 S; 4US1 S; 4JGW A; 1NVU S; 4MGI E; 1NVW S; 4URZ S; 5CM9 A; 5CM8 A; 3T6G A; 2II0 A; 4URU S; 4MGK E; 2BYV E; 4L9M A; 4F7Z A; 1XD4 A; 4NYM S; 4URW S; 1XD2 C; 2IJE S; 4US2 S; 4MGY E; 4URX S; #chains in the Genus database with same CATH topology 3T6A A; 3KSY A; 4MH0 E; 4NYJ S; 4URV S; 3CF6 E; 4NYI S; 4URY S; 4MGZ E; 1NVX S; 1BKD S; 3QXL A; 1NVV S; 4US0 S; 4US1 S; 4JGW A; 1NVU S; 4MGI E; 1NVW S; 4URZ S; 5CM9 A; 5CM8 A; 3T6G A; 2II0 A; 4URU S; 4MGK E; 2BYV E; 4L9M A; 4F7Z A; 1XD4 A; 4NYM S; 4URW S; 1XD2 C; 2IJE S; 4US2 S; 4MGY E; 4URX S; #chains in the Genus database with same CATH homology 3T6A A; 3KSY A; 4MH0 E; 4NYJ S; 4URV S; 3CF6 E; 4NYI S; 4URY S; 4MGZ E; 1NVX S; 1BKD S; 3QXL A; 1NVV S; 4US0 S; 4US1 S; 4JGW A; 1NVU S; 4MGI E; 1NVW S; 4URZ S; 5CM9 A; 5CM8 A; 3T6G A; 2II0 A; 4URU S; 4MGK E; 2BYV E; 4L9M A; 4F7Z A; 1XD4 A; 4NYM S; 4URW S; 1XD2 C; 2IJE S; 4US2 S; 4MGY E; 4URX S;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
