The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
19
|
sequence length |
72
|
structure length |
72
|
Chain Sequence |
GSHMPQIERRIKKLISLGKKKGYITYEDIDKAFPPDFEGFDTNLIERIHEELEKHGINIVENEPEEEEISAG
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Transcription
|
| molecule keywords |
RNA polymerase sigma factor rpoD
|
| publication title |
Autoregulation of a Group 1 Bacterial Sigma Factor Involves the Formation of a Region 1.1 - Induced Compacted Structure
rcsb |
| source organism |
Thermotoga maritima
|
| total genus |
19
|
| structure length |
72
|
| sequence length |
72
|
| ec nomenclature | |
| pdb deposition date | 2008-07-28 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | Annexin V; domain 1 | Annexin V; domain 1 |
#chains in the Genus database with same CATH superfamily 4KN7 X; 4KN4 X; 2K6X A; 4KMU X; 4JK1 X; #chains in the Genus database with same CATH topology 1YGM A; 4Q2S A; 1A8A A; 1YCN A; 1HVE A; 3ABS A; 4Z21 A; 1LKV X; 1N44 A; 2ZHJ A; 1HVD A; 4MDU A; 4X9P A; 3TW5 A; 2IE6 A; 1AEI A; 2XO3 A; 4FHR B; 1RE0 B; 3ABO A; 2VXG A; 1N42 A; 1AVR A; 1BC9 A; 3USW A; 1KU1 A; 2QEZ A; 1W3W A; 2HYW A; 3SWV A; 1ANX A; 1HM6 A; 3L8N A; 2R09 A; 2R0D A; 4EVH A; 4KMU X; 1BO9 A; 1XJL A; 1W45 A; 4EVF A; 2H0L A; 1YJ0 A; 4D7R A; 1HAK A; 1UPT B; 4JMI A; 1ANN A; 1SAV A; 4C7P A; 1C1K A; 2II2 A; 1BCZ A; 2K6X A; 1R8S E; 1DM5 A; 1BCW A; 2H0K A; 2IE7 A; 2ZHI A; 1R8Q E; 2HYV A; 4KN7 X; 1AII A; 2H0M A; 1R8M E; 4HRE A; 1A8B A; 4L5M A; 1BCY A; 1AXN A; 1W7B A; 1AVC A; 1N00 A; 1XT0 B; 1ALA A; 4JMO A; 4D7Q A; 2IIC A; 1XSZ A; 1M9I A; 2Q4C A; 3USY A; 2RAN A; 3ANY A; 1DK5 A; 4JXH A; 1S9D E; 1HVF A; 1QC7 A; 1I4A A; 3AO0 A; 1YII A; 3ABQ A; 4KN4 X; 1AOW A; 4OIY A; 1AVH A; 4JK1 X; 1N41 A; 2HSN A; 1BC0 A; 3AJC A; 4A4P A; 1PBV A; 3ABR A; 4C0A A; 3SOH B; 2XO2 A; 1BC3 A; 1BC1 A; 2HYU A; 1R4A E; 4MDV A; 1Q8D A; 1G5N A; 4JWL A; 3BRX A; 2OY9 A; 3LTL A; 1ANW A; 3HJL A; 2ZOC A; 1HVG A; 1MCX A; 4FQ0 C; #chains in the Genus database with same CATH homology 2R09 A; 4KN7 X; 2R0D A; 4KN4 X; 4KMU X; 1R8M E; 4OIY A; 4Z21 A; 1LKV X; 4JK1 X; 4L5M A; 2HSN A; 3AJC A; 3TW5 A; 4A4P A; 1PBV A; 4C0A A; 3SOH B; 4FHR B; 4D7R A; 1XT0 B; 4JMO A; 4D7Q A; 1XSZ A; 1RE0 B; 4JMI A; 3USY A; 1Q8D A; 1BC9 A; 3USW A; 4JXH A; 1KU1 A; 4JWL A; 1S9D E; 4C7P A; 1QC7 A; 3LTL A; 3HJL A; 2K6X A; 1R8S E; 3SWV A; 1R8Q E; 3L8N A; 4FQ0 C;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
