The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
55
|
sequence length |
216
|
structure length |
208
|
Chain Sequence |
KPCKLGDMQCLSSATEQFLEKTSKGIPQYDIWPIDPLVVTSLDVIAPSDAGIVIRFKNLNITGLKNQQISDFQMDTKAKTVLLKTKADLHIVGDIVIELTEQSKSFTGLYTADTNVIGAVRYGYNLKNDDNGVQHFEVQPETFTCESIGEPKITLSSDLSSALEKDSGEPLKTLRQAAICKIAEACYISVVHNIRASAKILPASSFFE
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Transport protein
|
| molecule keywords |
Hemolymph juvenile hormone binding protein
|
| publication title |
Crystal structure of silkworm Bombyx mori JHBP in complex with 2-methyl-2,4-pentanediol: plasticity of JH-binding pocket and ligand-induced conformational change of the second cavity in JHBP
pubmed doi rcsb |
| source organism |
Bombyx mori
|
| total genus |
55
|
| structure length |
208
|
| sequence length |
216
|
| chains with identical sequence |
B, C, D
|
| ec nomenclature | |
| pdb deposition date | 2009-04-27 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | Super Roll | Bactericidal permeability-increasing protein; domain 1 | Bactericidal permeability-increasing protein; domain 1 |
#chains in the Genus database with same CATH superfamily 2RCK A; 3A1Z A; 3E8T A; 3E8W A; 3AOT A; 4G0S A; 2RQF A; 3AOS A; #chains in the Genus database with same CATH topology 1EWF A; 2RCK A; 4M4D A; 2OBD A; 4KGO A; 3UV1 A; 4G0S A; 1USV B; 3N72 A; 4F2A A; 5I7L A; 4KGH A; 4EWS A; 3E8T A; 2RQF A; 3AOS A; 5I7J A; 1BP1 A; 3E8W A; 3AOT A; 5I7K A; 3ZPM A; 3H4Z A; 3A1Z A; 3L6I A; 1USU B; #chains in the Genus database with same CATH homology 1EWF A; 2RCK A; 4M4D A; 2OBD A; 4KGO A; 3UV1 A; 4G0S A; 1USV B; 3N72 A; 4F2A A; 5I7L A; 4KGH A; 4EWS A; 3E8T A; 2RQF A; 3AOS A; 5I7J A; 1BP1 A; 3E8W A; 3AOT A; 5I7K A; 3ZPM A; 3H4Z A; 3A1Z A; 3L6I A; 1USU B;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
