The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
25
|
sequence length |
138
|
structure length |
138
|
Chain Sequence |
AMTYHLDVVSAEQQMFSGLVEKIQVTGSEGELGIYPGHAPLLTAIKPGMIRIVKQHGHEEFIYLSGGILEVQPGNVTVLADTAIRGQDLDEARAMEAKRKAEEHISSSHGDVDYAQASAELAKAIAQLRVIELTKKAM
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Hydrolase/transport protein
|
| molecule keywords |
ATP synthase subunit alpha
|
| publication title |
Structural basis for inhibition of bacterial ATP synthase by subunit epsilon of the rotor stalk
rcsb |
| source organism |
Escherichia coli dh1
|
| total genus |
25
|
| structure length |
138
|
| sequence length |
138
|
| chains with identical sequence |
P, X, f
|
| ec nomenclature | |
| pdb deposition date | 2010-08-05 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| H | PF00401 | ATP-synt_DE | ATP synthase, Delta/Epsilon chain, long alpha-helix domain |
| H | PF02823 | ATP-synt_DE_N | ATP synthase, Delta/Epsilon chain, beta-sandwich domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Sandwich | ATP Synthase; domain 1 | F0F1 ATP synthase delta/epsilon subunit, N-terminal |
#chains in the Genus database with same CATH superfamily 2XOK H; 2RQ7 A; 2XND H; 3OEH H; 3OFN H; 1AQT A; 1FS0 E; 5DN6 I; 2RQ6 A; 4YXW H; 3FKS H; 1H8E H; 2E5Y A; 2HLD H; 1BSH A; 5FL7 H; 4ASU H; 2QE7 H; 1BSN A; 1E79 H; 3OAA H; 3OE7 H; 2V7Q H; 2WSS H; #chains in the Genus database with same CATH topology 2XOK H; 2RQ7 A; 2XND H; 3OEH H; 3OFN H; 1AQT A; 1FS0 E; 5DN6 I; 2RQ6 A; 4YXW H; 3FKS H; 1H8E H; 2E5Y A; 2HLD H; 1BSH A; 5FL7 H; 4ASU H; 2QE7 H; 1BSN A; 1E79 H; 3OAA H; 3OE7 H; 2V7Q H; 2WSS H; #chains in the Genus database with same CATH homology 2XOK H; 2RQ7 A; 2XND H; 3OEH H; 3OFN H; 1AQT A; 1FS0 E; 5DN6 I; 2RQ6 A; 4YXW H; 3FKS H; 1H8E H; 2E5Y A; 2HLD H; 1BSH A; 5FL7 H; 4ASU H; 2QE7 H; 1BSN A; 1E79 H; 3OAA H; 3OE7 H; 2V7Q H; 2WSS H;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
