3OURB

Crystal structure of complex between eiia and a novel pyruvate decarboxylase
Total Genus 35
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
35
sequence length
150
structure length
150
Chain Sequence
AIEIIAPLSGEIVNIEDVPDVVFAEKIVGDGIAIKPTGNKMVAPVNGTIGKIFETNHAFSIESDDGVELFVHFGIDTVELKGEGFTRIAEEGQTVKAGDTVIEFDLALLEEKAKSTLTPVVISNMDEIKELNKLSGSVVVGETPVLRVTK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase/transferase
molecule keywords UPF0255 protein VV1_0328
publication title FrsA functions as a cofactor-independent decarboxylase to control metabolic flux
pubmed doi rcsb
source organism Vibrio vulnificus
total genus 35
structure length 150
sequence length 150
chains with identical sequence D, F, H
ec nomenclature
pdb deposition date 2010-09-15
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.70.10 Mainly Beta Distorted Sandwich Glucose Permease (Domain IIA) Glucose Permease (Domain IIA) 3ourB00
1GPRA 2B0PA 4BH5A 3IT7A 3SLUA 3OURB 3UZ0B 1GGRA 3NYYA 1AX3A 2MP0B 4LXCA 3CSQA 1GLDF 4ZYBA 1F3GA 2GPRA 1GLCF 1QWYA 3TUFB 4RNYA 1GLEF 2HSIA 4QP5A 3IT5A 2B44A 4JBWM 1O2FA 2GU1A 4RNZA 5KVPA 1F3ZA 5B0HA 4QPBA 1GLBF 1GLAF 2F3GA 2B13A
chains in the Genus database with same CATH superfamily
1GPRA 2B0PA 4BH5A 3IT7A 3SLUA 3OURB 3UZ0B 1GGRA 3NYYA 1AX3A 2MP0B 4LXCA 3CSQA 1GLDF 4ZYBA 1F3GA 2GPRA 1GLCF 1QWYA 3TUFB 4RNYA 1GLEF 2HSIA 4QP5A 3IT5A 2B44A 4JBWM 1O2FA 2GU1A 4RNZA 5KVPA 1F3ZA 5B0HA 4QPBA 1GLBF 1GLAF 2F3GA 2B13A
chains in the Genus database with same CATH topology
1GPRA 2B0PA 4BH5A 3IT7A 3SLUA 3OURB 3UZ0B 1GGRA 3NYYA 1AX3A 2MP0B 4LXCA 3CSQA 1GLDF 4ZYBA 1F3GA 2GPRA 1GLCF 1QWYA 3TUFB 4RNYA 1GLEF 2HSIA 4QP5A 3IT5A 2B44A 4JBWM 1O2FA 2GU1A 4RNZA 5KVPA 1F3ZA 5B0HA 4QPBA 1GLBF 1GLAF 2F3GA 2B13A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1GPR A;  2B0P A;  4BH5 A;  3IT7 A;  3SLU A;  3OUR B;  3UZ0 B;  1GGR A;  3NYY A;  1AX3 A;  2MP0 B;  4LXC A;  3CSQ A;  1GLD F;  4ZYB A;  1F3G A;  2GPR A;  1GLC F;  1QWY A;  3TUF B;  4RNY A;  1GLE F;  2HSI A;  4QP5 A;  3IT5 A;  2B44 A;  4JBW M;  1O2F A;  2GU1 A;  4RNZ A;  5KVP A;  1F3Z A;  5B0H A;  4QPB A;  1GLB F;  1GLA F;  2F3G A;  2B13 A; 
#chains in the Genus database with same CATH topology
 1GPR A;  2B0P A;  4BH5 A;  3IT7 A;  3SLU A;  3OUR B;  3UZ0 B;  1GGR A;  3NYY A;  1AX3 A;  2MP0 B;  4LXC A;  3CSQ A;  1GLD F;  4ZYB A;  1F3G A;  2GPR A;  1GLC F;  1QWY A;  3TUF B;  4RNY A;  1GLE F;  2HSI A;  4QP5 A;  3IT5 A;  2B44 A;  4JBW M;  1O2F A;  2GU1 A;  4RNZ A;  5KVP A;  1F3Z A;  5B0H A;  4QPB A;  1GLB F;  1GLA F;  2F3G A;  2B13 A; 
#chains in the Genus database with same CATH homology
 1GPR A;  2B0P A;  4BH5 A;  3IT7 A;  3SLU A;  3OUR B;  3UZ0 B;  1GGR A;  3NYY A;  1AX3 A;  2MP0 B;  4LXC A;  3CSQ A;  1GLD F;  4ZYB A;  1F3G A;  2GPR A;  1GLC F;  1QWY A;  3TUF B;  4RNY A;  1GLE F;  2HSI A;  4QP5 A;  3IT5 A;  2B44 A;  4JBW M;  1O2F A;  2GU1 A;  4RNZ A;  5KVP A;  1F3Z A;  5B0H A;  4QPB A;  1GLB F;  1GLA F;  2F3G A;  2B13 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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