The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
106
|
sequence length |
349
|
structure length |
349
|
Chain Sequence |
KSKLPKPVQDLIKMIFDVESMKKAMVEYEIDLQKMPLGKLSKRQIQAAYSILSEVQQAVSQGSSDSQILDLSNRFYTLIPHDFGMKKPPLLNNADSVQAKAEMLDNLLDIEVAYSLLRGGSDDSSKDPIDVNYEKLKTDIKVVDRDSEEAEIIRKYVKNTHATTHNAYDLEVIDIFKIEREGECQRYKPFKQLHNRRLLWHGSRTTNFAGILSQGLRIAPPEAPVTGYMFGKGIYFADMVSKSANYCHTSQGDPIGLILLGEVALGNMYELKHASHISKLPKGKHSVKGLGKTTPDPSANISLDGVDVPLGTGISSGVNDTSLLYNEYIVYDIAQVNLKYLLKLKFNFK
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Transferase/transferase inhibitor
|
| molecule keywords |
Poly [ADP-ribose] polymerase 1
|
| publication title |
Design, Synthesis, and Biological Evaluation of a Series of Benzo[de][1,7]naphthyridin-7(8H)-ones Bearing a Functionalized Longer Chain Appendage as Novel PARP1 Inhibitors.
pubmed doi rcsb |
| source organism |
Homo sapiens
|
| total genus |
106
|
| structure length |
349
|
| sequence length |
349
|
| chains with identical sequence |
B, C, D
|
| ec nomenclature |
ec
2.4.2.30: NAD(+) ADP-ribosyltransferase. |
| pdb deposition date | 2012-10-10 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00644 | PARP | Poly(ADP-ribose) polymerase catalytic domain |
| A | PF02877 | PARP_reg | Poly(ADP-ribose) polymerase, regulatory domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Up-down Bundle | Poly(ADP-ribose) Polymerase; domain 1 | Poly(ADP-ribose) polymerase, regulatory domain | ||
| Alpha Beta | Alpha-Beta Complex | Phosphoenolpyruvate Carboxykinase; domain 3 | Phosphoenolpyruvate Carboxykinase; domain 3 |
#chains in the Genus database with same CATH superfamily 4DVI A; 3UH2 A; 4L7N A; 3W51 A; 4BU7 A; 4BUI A; 4UVS A; 4BU8 A; 5ECE A; 4BUU A; 4MT9 A; 4L0B A; 4UVO A; 4UVU A; 5AL2 A; 5AL5 A; 4L70 A; 2X5Y A; 4U6A A; 4KZQ A; 3L3M A; 4J1Z A; 5AL3 A; 1GS0 A; 3C49 A; 4L0I A; 4PNQ A; 4UVN A; 4PNT A; 5AL4 A; 4UI7 A; 4BFP A; 3P0Q A; 4HMH A; 4PY4 A; 3CE0 A; 4L6S A; 4UFU A; 3SE2 A; 4PJT A; 4HYF A; 1EFY A; 3HKV A; 4I9I A; 4BU3 A; 4L7P A; 4L2G A; 4BUW A; 4BUT A; 4ZZX A; 4L34 A; 4UVZ A; 4J3L A; 4HLH A; 4L10 A; 5EBT A; 4HLG A; 4PNN A; 4TJW A; 5C5P A; 4UHG A; 4BJB A; 4PNS A; 4PML A; 4TKG A; 4GV4 A; 4KZL A; 4W5S A; 5DCZ A; 4KZU A; 3UDD A; 4R6E A; 4F1Q A; 4IUE A; 4UVP A; 5ADR A; 4HLK A; 3KR7 A; 4TKF A; 4L2F A; 4L0T A; 4TJU A; 3GOY A; 4L7R A; 5LX6 A; 4BUD A; 4BUE A; 4R5W A; 4J21 A; 4KRS A; 5ADQ A; 4L32 A; 4DQY C; 4X52 A; 4M7B A; 4PNM A; 4BUS A; 4ZZZ A; 5FPG A; 1UK0 A; 4L7O A; 4HLM A; 4HHY A; 2PQF A; 2RCW A; 4GV7 A; 4PAX A; 4L6Z A; 4HHZ A; 4GV0 A; 4TKI A; 4UXB A; 4UUH A; 4L2K A; 4N4T A; 5AL1 A; 5ETY A; 4UI3 A; 4TVJ A; 1UK1 A; 4AVU A; 1PAX A; 4W6E A; 4F1L A; 4GV2 A; 4HL5 A; 4UI5 A; 3U9Y A; 4BU9 A; 4UVW A; 3KJD A; 3SMI A; 4RV6 A; 4F0E A; 4L7L A; 4OQA C; 3C4H A; 3GEY A; 5AKU A; 5AEH A; 4TK0 A; 3GN7 A; 3GJW A; 4PJV A; 4HKI A; 4HLF A; 3SMJ A; 3BLJ A; 4MSG A; 5AKW A; 4W5I A; 4BS4 A; 4PNR A; 4HKK A; 4LI7 A; 4UFY A; 4BU5 A; 4PNL A; 5ADS A; 4BJ9 A; 3L3L A; 4TJY A; 4UVT A; 4UVV A; 4TOS A; 1WOK A; 4LI6 A; 4UI8 A; 3KR8 A; 4L31 A; 3PAX A; 4BUA A; 4J22 A; 4BU6 A; 3KCZ A; 4UVX A; 5A00 A; 5ADT A; 4UND A; 4BUY A; 3MHJ A; 3UA9 A; 3MHK A; 2PAX A; 4ZZY A; 5LYH A; 4AVW A; 5LXP A; 3P0P A; 4HKN A; 4MSK A; 4OA7 A; 4UW1 A; 4BUF A; 4BJC A; 4L33 A; 4XHU A; 4N4V A; 5C5R A; 3UH4 A; 4L09 A; 4N3R A; 4UI6 A; 2RF5 A; 3U9H A; 4UVY A; 3P0N A; 4K4E A; 3FHB A; 4UVL A; 4BUV A; 4BUX A; 4L7U A; 4OQB C; 4L0S A; 4UX4 A; 1A26 A; 4UI4 A; 4K4F A; 2RD6 A; 4L0V A; 4TK5 A; 4J3M A; 5C5Q A; 2PAW A; 4LI8 A; 4OPX C; 5FPF A; 4TOR A; #chains in the Genus database with same CATH topology 3UH2 A; 4L7N A; 4WIU A; 4UVS A; 1K3D A; 5AL2 A; 4L70 A; 3DT2 A; 4UVN A; 4UI7 A; 4HMH A; 4L6S A; 4R43 A; 4BU3 A; 4BUT A; 3MOH A; 5C5P A; 4WPU A; 1K3C A; 4YWD A; 4PML A; 5DCZ A; 4IUE A; 3DT4 A; 2FAH A; 3ZLA A; 4L2F A; 1KHF A; 4BUE A; 4R5W A; 4GNO A; 4WOU A; 4M7B A; 4RCG A; 4PNM A; 4ZZZ A; 5FPG A; 4HLM A; 4GV7 A; 4TVJ A; 4AVU A; 3U9Y A; 2PXZ X; 3GN7 A; 3GJW A; 4HLF A; 4IDX A; 2QEW A; 4BS4 A; 4HKK A; 4PNL A; 5ADS A; 4BJ9 A; 2QZY A; 2GMV A; 4UVX A; 4BUY A; 4YW9 A; 4GMU A; 5LYH A; 4GMM A; 4OA7 A; 4BUF A; 4L09 A; 2RF5 A; 3U9H A; 4UVY A; 2ZCI A; 1A26 A; 4GMW A; 5FH4 A; 4J3M A; 5C5Q A; 4LI8 A; 4L31 A; 4TOR A; 4DVI A; 1M51 A; 1OS1 A; 5ECE A; 4L0B A; 4UVO A; 4WL8 A; 5AL5 A; 1KHG A; 5AL3 A; 4L0I A; 3P0Q A; 4UFU A; 2RK8 A; 3SE2 A; 4YW8 A; 4HYF A; 1EFY A; 3HKV A; 4I9I A; 4L7P A; 4L10 A; 4PNN A; 4TJW A; 4TKG A; 4KZU A; 4IDU B; 3KR7 A; 4TKF A; 1KHB A; 1UK0 A; 4L7O A; 4PAX A; 1YTM A; 4UXB A; 5AL1 A; 4UI3 A; 1UK1 A; 1AYL A; 4JNG A; 4GV2 A; 4BU9 A; 3ZL9 A; 2FAF A; 4L7L A; 5FH0 A; 2RK7 A; 4HKI A; 3BLJ A; 4MSG A; 4W5I A; 4LI7 A; 4UFY A; 4IDU A; 4TOS A; 4GNL A; 3KR8 A; 4WIE A; 4UND A; 3UA9 A; 4YWB A; 2PAX A; 4ZZY A; 4AVW A; 4UW1 A; 4J1J A; 4BHH B; 4L33 A; 5C5R A; 3FHB A; 4BUX A; 4WPV A; 4K4F A; 2RD6 A; 4OPX C; 5FPF A; 3W51 A; 4BU7 A; 4BUI A; 4BU8 A; 4BUU A; 4MT9 A; 3MOE A; 4GNQ A; 2X5Y A; 4KZQ A; 1GS0 A; 4PNQ A; 4PNT A; 5AL4 A; 4BFP A; 1YLH A; 4PY4 A; 3CE0 A; 4PJT A; 4BUW A; 4L2G A; 4ZZX A; 4J3L A; 4HLH A; 4HLG A; 4UHG A; 4BJB A; 3UDD A; 4KZL A; 4W5S A; 4R6E A; 4UVP A; 5FH1 A; 5ADR A; 4L0T A; 1KHE A; 3GOY A; 4L7R A; 5LX6 A; 4BUD A; 4J21 A; 4DQY C; 5I67 A; 4X52 A; 4BUS A; 2PQF A; 2RCW A; 4L6Z A; 4HHZ A; 4GV0 A; 4TKI A; 4UUH A; 4L2K A; 2QEY A; 4W6E A; 2OLR A; 4F1L A; 1II2 A; 4HL5 A; 1OEN A; 4UI5 A; 3KJD A; 3SMI A; 4GNM A; 2PC9 A; 3GEY A; 4OX2 A; 5AKU A; 4TK0 A; 4PJV A; 2RKD A; 4GMZ A; 4J1G A; 4BU5 A; 3L3L A; 4UVT A; 4GNP A; 1WOK A; 4UI8 A; 3DT7 A; 4BUA A; 4BU6 A; 5A00 A; 2PY7 X; 3MHJ A; 5FH3 A; 3P0P A; 4N3R A; 4UI6 A; 4K4E A; 4BUV A; 4L7U A; 4OQB C; 4L0S A; 1NHX A; 4BGP A; 4IJS A; 1YVY A; 5FH2 A; 2RKE A; 4WPT A; 4UVU A; 4U6A A; 3L3M A; 4J1Z A; 3C49 A; 2QF1 A; 4UVZ A; 4L34 A; 2OLQ A; 5EBT A; 4PNS A; 4GV4 A; 4F1Q A; 1AQ2 A; 4HLK A; 2QF2 A; 1J3B A; 4TJU A; 4KRS A; 5ADQ A; 4L32 A; 4HHY A; 3MOF A; 4N4T A; 5ETY A; 1YGG A; 1PAX A; 2RKA A; 4UVW A; 4RV6 A; 4F0E A; 4OQA C; 3C4H A; 5AEH A; 3SMJ A; 5AKW A; 4PNR A; 4TJY A; 4UVV A; 4LI6 A; 3DTB A; 3PAX A; 4J22 A; 3KCZ A; 1XKV A; 5ADT A; 3MHK A; 5LXP A; 4HKN A; 4MSK A; 4BJC A; 4XHU A; 4N4V A; 3UH4 A; 3P0N A; 4UVL A; 4UX4 A; 4UI4 A; 4L0V A; 4TK5 A; 5FH5 A; 2PAW A; #chains in the Genus database with same CATH homology 4DVI A; 3UH2 A; 4L7N A; 3W51 A; 2RKE A; 1M51 A; 4WIU A; 4BU7 A; 4BUI A; 4WPT A; 4UVS A; 1OS1 A; 4BU8 A; 5ECE A; 4BUU A; 4MT9 A; 1K3D A; 4L0B A; 4UVO A; 4WL8 A; 3MOE A; 4UVU A; 4GNQ A; 4L70 A; 5AL2 A; 2X5Y A; 4U6A A; 5AL5 A; 3DT2 A; 4KZQ A; 1KHG A; 3L3M A; 4J1Z A; 5AL3 A; 1GS0 A; 3C49 A; 4L0I A; 4PNQ A; 4UVN A; 4PNT A; 5AL4 A; 4UI7 A; 4BFP A; 2QF1 A; 3P0Q A; 4HMH A; 1YLH A; 4PY4 A; 3CE0 A; 4L6S A; 4UFU A; 2RK8 A; 4PJT A; 3SE2 A; 4YW8 A; 4HYF A; 4R43 A; 1EFY A; 3HKV A; 4I9I A; 4BU3 A; 4L7P A; 4L2G A; 4BUW A; 4BUT A; 4ZZX A; 4L34 A; 2OLQ A; 4J3L A; 3MOH A; 4HLH A; 4L10 A; 4UVZ A; 5EBT A; 4HLG A; 4PNN A; 4TJW A; 5C5P A; 4UHG A; 4WPU A; 1K3C A; 4YWD A; 4BJB A; 4PNS A; 4PML A; 4TKG A; 4GV4 A; 4KZL A; 4W5S A; 5DCZ A; 4KZU A; 3UDD A; 4R6E A; 4F1Q A; 4IUE A; 4UVP A; 5LYH A; 3DT4 A; 5FH1 A; 5ADR A; 1AQ2 A; 2FAH A; 4HLK A; 3KR7 A; 2QF2 A; 4L2F A; 4L0T A; 4TKF A; 1KHF A; 1KHE A; 1J3B A; 4TJU A; 3GOY A; 4L7R A; 5LX6 A; 4BUD A; 4BUE A; 4R5W A; 4J21 A; 1KHB A; 4GNO A; 4KRS A; 4WOU A; 4L32 A; 5ADQ A; 4DQY C; 5I67 A; 4X52 A; 4M7B A; 4RCG A; 4PNM A; 4BUS A; 4ZZZ A; 5FPG A; 1UK0 A; 4L7O A; 4HHY A; 2PQF A; 4HLM A; 2RCW A; 4GV7 A; 4PAX A; 3MOF A; 4L6Z A; 4HHZ A; 4GV0 A; 1YTM A; 4UXB A; 4TKI A; 4UUH A; 4L2K A; 4N4T A; 5AL1 A; 5ETY A; 4UI3 A; 4TVJ A; 1YGG A; 1UK1 A; 2QEY A; 4AVU A; 1PAX A; 1AYL A; 4W6E A; 2OLR A; 4F1L A; 4GV2 A; 1II2 A; 4HL5 A; 1OEN A; 2RKA A; 4UI5 A; 3U9Y A; 4BU9 A; 4UVW A; 3KJD A; 3SMI A; 2FAF A; 4RV6 A; 4GNM A; 4L7L A; 4F0E A; 4OQA C; 2PC9 A; 2PXZ X; 3C4H A; 3GEY A; 5FH0 A; 4OX2 A; 5AKU A; 5AEH A; 4TK0 A; 3GN7 A; 3GJW A; 4PJV A; 2RK7 A; 2RKD A; 4HKI A; 4HLF A; 2QEW A; 3BLJ A; 4MSG A; 4GMZ A; 4W5I A; 5AKW A; 3SMJ A; 4PNR A; 4BS4 A; 4HKK A; 4LI7 A; 4UFY A; 5FH2 A; 4BU5 A; 4PNL A; 5ADS A; 4BJ9 A; 3L3L A; 4TJY A; 4UVT A; 2QZY A; 4GNP A; 4UVV A; 2GMV A; 4TOS A; 1WOK A; 4LI6 A; 4UI8 A; 4GNL A; 3KR8 A; 4WIE A; 3DTB A; 3DT7 A; 4L31 A; 3PAX A; 4BUA A; 4J22 A; 4BU6 A; 3KCZ A; 4UVX A; 5A00 A; 1XKV A; 2PY7 X; 5ADT A; 4UND A; 4BUY A; 3MHJ A; 4YW9 A; 3UA9 A; 3MHK A; 4GMU A; 2PAX A; 4ZZY A; 4GMM A; 4YWB A; 4AVW A; 3P0P A; 5FH3 A; 5LXP A; 4HKN A; 4MSK A; 4OA7 A; 4UW1 A; 4BUF A; 4BJC A; 4L33 A; 4XHU A; 4N4V A; 5C5R A; 3UH4 A; 4L09 A; 4N3R A; 4UI6 A; 2RF5 A; 3U9H A; 4UVY A; 3P0N A; 4K4E A; 3FHB A; 4UVL A; 4BUV A; 4BUX A; 4L7U A; 4OQB C; 4L0S A; 4UX4 A; 4WPV A; 2ZCI A; 1A26 A; 1NHX A; 4GMW A; 4UI4 A; 4K4F A; 1YVY A; 2RD6 A; 4L0V A; 4TK5 A; 5FH4 A; 4J3M A; 5FH5 A; 5C5Q A; 2PAW A; 4LI8 A; 4OPX C; 5FPF A; 4TOR A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
