5E10A

Crystal structure of pasta domains 1 and 2 of mycobacterium tuberculosis protein kinase b
Total Genus 36
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
133
structure length
133
Chain Sequence
GVQVPDVRGQSSADAIATLQNRGFKIRTLQKPDSTIPPDHVIGTDPAANTSVSAGDEITVNVSTGPEQREIPDVSTLTYAEAVKKLTAAGFGRFKQANSPSTPELVGKVIGTNPPANQTSAITNVVIIIVGSG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transferase
molecule keywords Serine/threonine-protein kinase PknB
publication title Structural and Genetic Analyses of the Mycobacterium tuberculosis Protein Kinase B Sensor Domain Identify a Potential Ligand-binding Site.
pubmed doi rcsb
source organism Mycobacterium tuberculosis (strain atcc 25618 / h37rv)
total genus 36
structure length 133
sequence length 133
ec nomenclature ec 2.7.11.1: Non-specific serine/threonine protein kinase.
pdb deposition date 2015-09-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03793 PASTA PASTA domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.10.20 Alpha Beta 2-Layer Sandwich Trypsin Inhibitor V; Chain A Trypsin Inhibitor V; Chain A 5e10A02
3.30.10.20 Alpha Beta 2-Layer Sandwich Trypsin Inhibitor V; Chain A Trypsin Inhibitor V; Chain A 5e10A01
2MGVA 2KUFA 3M9GA 2KUDA 2KUIA 3OUVA 5E10A 5E0YA 5E0ZA 3PY9A 2KUEA
chains in the Genus database with same CATH superfamily
3RDYA 5FFNI 1DWMA 1TM3I 1COAI 1Y1KI 1Y3FI 2SECI 3OUVA 1TMGI 1Y3CI 5E0YA 4B2AB 1YPAI 1TM5I 1TM7I 3RDZC 1TO1I 3TECI 2TECI 1CISA 1HYMA 1CSEI 3PY9A 1Y33I 1SIBI 1TM1I 1Y4DI 2KUFA 1TM4I 1VBWA 1Y3DI 2MGVA 3M9GA 4B2CB 2KUIA 3W0EA 2SNII 4H4FB 5FBZB 1Y48I 4B2BB 3W0DA 1MITA 1YPBI 1LW6I 1TINA 4B1TB 1SBNI 1TECI 3CI2A 1EGLA 2CI2I 2KUDA 1Y3BI 1ACBI 1TO2I 1Y34I 1Y4AI 5E10A 1MEEI 5E0ZA 1YPCI 2KUEA
chains in the Genus database with same CATH topology
2MGVA 2KUFA 3M9GA 2KUDA 2KUIA 3OUVA 5E10A 5E0YA 5E0ZA 3PY9A 2KUEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2MGV A;  2KUF A;  3M9G A;  2KUD A;  2KUI A;  3OUV A;  5E10 A;  5E0Y A;  5E0Z A;  3PY9 A;  2KUE A; 
#chains in the Genus database with same CATH topology
 3RDY A;  5FFN I;  1DWM A;  1TM3 I;  1COA I;  1Y1K I;  1Y3F I;  2SEC I;  3OUV A;  1TMG I;  1Y3C I;  5E0Y A;  4B2A B;  1YPA I;  1TM5 I;  1TM7 I;  3RDZ C;  1TO1 I;  3TEC I;  2TEC I;  1CIS A;  1HYM A;  1CSE I;  3PY9 A;  1Y33 I;  1SIB I;  1TM1 I;  1Y4D I;  2KUF A;  1TM4 I;  1VBW A;  1Y3D I;  2MGV A;  3M9G A;  4B2C B;  2KUI A;  3W0E A;  2SNI I;  4H4F B;  5FBZ B;  1Y48 I;  4B2B B;  3W0D A;  1MIT A;  1YPB I;  1LW6 I;  1TIN A;  4B1T B;  1SBN I;  1TEC I;  3CI2 A;  1EGL A;  2CI2 I;  2KUD A;  1Y3B I;  1ACB I;  1TO2 I;  1Y34 I;  1Y4A I;  5E10 A;  1MEE I;  5E0Z A;  1YPC I;  2KUE A; 
#chains in the Genus database with same CATH homology
 2MGV A;  2KUF A;  3M9G A;  2KUD A;  2KUI A;  3OUV A;  5E10 A;  5E0Y A;  5E0Z A;  3PY9 A;  2KUE A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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