The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
243
|
sequence length |
619
|
structure length |
611
|
Chain Sequence |
MYGWWGRILRVNLTTGEVKVQEYPEEVAKKFIGGRGLAAWILWNEARGVEPLSPENKLIFAAGPFNGLPTPSGGKLVVAAKSPLTGGYGDGNLGTMASVHLRRAGYDALVVEGKAKKPVYIYIEDDNVSILSAEGLWGKTTFETERELKEIHGKNVGVLTIGPAGENLVKYAVVISQEGRAAGRPGMGAVMGSKKLKAVVIRGTKEIPVADKEELKKLSQEAYNEILNSPGYPFWKRQGTMAAVEWCNTNYALPTRNFSDGYFEFARSIDGYTMEGMKVQQRGCPYCNMPCGNVVLDAEGQESELDYENVALLGSNLGIGKLNEVSVLNRIADEMGMDTISLGVSIAHVMEAVERGILKEGPTFGDFKGAKQLALDIAYRKGELGNLAAEGVKAMAEKLGTHDFAMHVKGLEVSGYNCYIYPAMALAYGTSAIGAHHKEAWVIAWEIGTAPIEYKISYDPIKAQKVVELQRLRGGLFEMLTACRLPWVEVGLSLDYYPKLLKAITGVTYTWDDLYKAADRVYSLIRAYWVREFNGKWDRKMDYPPKRWFTEGLKSGPHKGEHLDEKKYDELLSEYYRIRGWDERGIPKKETLKELDLDFVIPELEKVTNLE
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Formaldehyde ferredoxin oxidoreductase from Pyrococcus furiosus: the 1.85 A resolution crystal structure and its mechanistic implications.
pubmed doi rcsb |
| molecule tags |
Oxidoreductase
|
| molecule keywords |
FORMALDEHYDE FERREDOXIN OXIDOREDUCTASE
|
| total genus |
243
|
| structure length |
611
|
| sequence length |
619
|
| chains with identical sequence |
B, C, D
|
| ec nomenclature | |
| pdb deposition date | 1998-12-24 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01314 | AFOR_C | Aldehyde ferredoxin oxidoreductase, domains 2 & 3 |
| A | PF02730 | AFOR_N | Aldehyde ferredoxin oxidoreductase, N-terminal domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | Aldehyde Ferredoxin Oxidoreductase Protein, subunit A; domain 2 | Aldehyde Ferredoxin Oxidoreductase Protein, subunit A, domain 2 | ||
| Mainly Alpha | Orthogonal Bundle | Aldehyde Ferredoxin Oxidoreductase Protein, subunit A; domain 3 | Aldehyde Ferredoxin Oxidoreductase Protein, subunit A, domain 3 | ||
| Alpha Beta | 4-Layer Sandwich | Aldehyde Ferredoxin Oxidoreductase; A, domain 1 | Aldehyde ferredoxin oxidoreductase, N-terminal domain |
#chains in the Genus database with same CATH superfamily 1B4N A; 4Z3Y A; 1AOR A; 4Z3X A; 1B25 A; 4Z3W A; 4Z40 A; 4Z3Z A; #chains in the Genus database with same CATH topology 1B4N A; 4Z3Y A; 1AOR A; 4Z3X A; 1B25 A; 4Z3W A; 4Z40 A; 4Z3Z A; #chains in the Genus database with same CATH homology 1B4N A; 4Z3Y A; 1AOR A; 4Z3X A; 1B25 A; 4Z3W A; 4Z40 A; 4Z3Z A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
