1B97 | Genus

Total Genus 76

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	76
sequence length	244
structure length	244
Chain Sequence	SLRSDLINALYDENQKYDVCGIISAEGKIYPLGSDTKVLSTIFELFSRPIINKIAEKHGYIVEEPKQLNHYPDFTLYKPSEPNKKIAIDIKTTYTNKENEKIKFTLGGYTSFIRNNTKNIVYPFDQYIAHWIIGYVYTRVATRKSSLKTYNINELNEIPKPYKGVKVFLQDKWVIAGDLAGSGNTTNIGSIHAHYKDFVEGKGIFDSEDEFLDYWRNYERTSQLRNDKYNNISEYRNWIYRGRK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 244 atoms

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244 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Hydrolase/dna
source organism	Escherichia coli
publication title	Structural analysis of a mutational hot-spot in the EcoRV restriction endonuclease: a catalytic role for a main chain carbonyl group. pubmed doi rcsb
molecule keywords	DNA (5'-D(APAPAPGPAPTPAPTPCPTP*T)-3')
total genus	76
structure length	244
sequence length	244
chains with identical sequence	B
ec nomenclature	ec 3.1.21.4: Type II site-specific deoxyribonuclease.
pdb deposition date	1999-02-19

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF09233	Endonuc-EcoRV	Restriction endonuclease EcoRV

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.40.600.10	Alpha Beta	3-Layer(aba) Sandwich	ECO RV Endonuclease; Chain A	DNA mismatch repair MutH/Restriction endonuclease, type II	1b97A00

3E45A 1EONA 1SX8A 2AUDA 5F8AA 1KC6A 1BSSA 1SUZA 1B97A 1B95A 3E40A 1BUAA 2GIGA 1RVEA 3EBCA 1STXA 2GIEA 1XHUA 1RV5A 1XHVA 1EOOA 3E41A 3E42A 2GIJA 1EV7A 3E44A 1BGBA 4RVEA 1EO3A 1TW8A 1AZ0A 2GIIA 4PXGA 3E43A 1AZOA 1AZ4A 2REUA 2B0DA 2AOQA 1IAWA 1EOPA 5HLKA 1TX3A 3E3YA 2AORA 1SX5A 1EO4A 2GIHA 1RVBA 2B0EA 1RVAA 1AZ3A 1BSUA 1RVCA 1B94A 2RVEA 2GE5A 1B96A 2AZOA
chains in the Genus database with same CATH superfamily

3E45A 2EZVA 1EONA 1DMUA 1SX8A 2AUDA 5F8AA 1KC6A 1BSSA 2F03A 1SUZA 1B97A 1B95A 3E40A 1BUAA 2GIGA 1RVEA 3EBCA 1STXA 2GIEA 1XHUA 1RV5A 1XHVA 1EOOA 3NDHA 3E41A 3E42A 2GIJA 1EV7A 3E44A 1BGBA 4RVEA 1EO3A 1TW8A 1AZ0A 2GIIA 4PXGA 3E43A 1AZOA 1AZ4A 2REUA 2B0DA 2AOQA 1IAWA 1EOPA 5HLKA 1TX3A 3E3YA 2AORA 1SX5A 1EO4A 2GIHA 1RVBA 2B0EA 1RVAA 1AZ3A 1BSUA 1RVCA 1B94A 2RVEA 2GE5A 1B96A 2AZOA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3E45 A;  1EON A;  1SX8 A;  2AUD A;  5F8A A;  1KC6 A;  1BSS A;  1SUZ A;  1B97 A;  1B95 A;  3E40 A;  1BUA A;  2GIG A;  1RVE A;  3EBC A;  1STX A;  2GIE A;  1XHU A;  1RV5 A;  1XHV A;  1EOO A;  3E41 A;  3E42 A;  2GIJ A;  1EV7 A;  3E44 A;  1BGB A;  4RVE A;  1EO3 A;  1TW8 A;  1AZ0 A;  2GII A;  4PXG A;  3E43 A;  1AZO A;  1AZ4 A;  2REU A;  2B0D A;  2AOQ A;  1IAW A;  1EOP A;  5HLK A;  1TX3 A;  3E3Y A;  2AOR A;  1SX5 A;  1EO4 A;  2GIH A;  1RVB A;  2B0E A;  1RVA A;  1AZ3 A;  1BSU A;  1RVC A;  1B94 A;  2RVE A;  2GE5 A;  1B96 A;  2AZO A; 
#chains in the Genus database with same CATH topology
 3E45 A;  2EZV A;  1EON A;  1DMU A;  1SX8 A;  2AUD A;  5F8A A;  1KC6 A;  1BSS A;  2F03 A;  1SUZ A;  1B97 A;  1B95 A;  3E40 A;  1BUA A;  2GIG A;  1RVE A;  3EBC A;  1STX A;  2GIE A;  1XHU A;  1RV5 A;  1XHV A;  1EOO A;  3NDH A;  3E41 A;  3E42 A;  2GIJ A;  1EV7 A;  3E44 A;  1BGB A;  4RVE A;  1EO3 A;  1TW8 A;  1AZ0 A;  2GII A;  4PXG A;  3E43 A;  1AZO A;  1AZ4 A;  2REU A;  2B0D A;  2AOQ A;  1IAW A;  1EOP A;  5HLK A;  1TX3 A;  3E3Y A;  2AOR A;  1SX5 A;  1EO4 A;  2GIH A;  1RVB A;  2B0E A;  1RVA A;  1AZ3 A;  1BSU A;  1RVC A;  1B94 A;  2RVE A;  2GE5 A;  1B96 A;  2AZO A; 
#chains in the Genus database with same CATH homology
 3E45 A;  1EON A;  1SX8 A;  2AUD A;  5F8A A;  1KC6 A;  1BSS A;  1SUZ A;  1B97 A;  1B95 A;  3E40 A;  1BUA A;  2GIG A;  1RVE A;  3EBC A;  1STX A;  2GIE A;  1XHU A;  1RV5 A;  1XHV A;  1EOO A;  3E41 A;  3E42 A;  2GIJ A;  1EV7 A;  3E44 A;  1BGB A;  4RVE A;  1EO3 A;  1TW8 A;  1AZ0 A;  2GII A;  4PXG A;  3E43 A;  1AZO A;  1AZ4 A;  2REU A;  2B0D A;  2AOQ A;  1IAW A;  1EOP A;  5HLK A;  1TX3 A;  3E3Y A;  2AOR A;  1SX5 A;  1EO4 A;  2GIH A;  1RVB A;  2B0E A;  1RVA A;  1AZ3 A;  1BSU A;  1RVC A;  1B94 A;  2RVE A;  2GE5 A;  1B96 A;  2AZO A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1B97A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations