The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
175
|
sequence length |
481
|
structure length |
481
|
Chain Sequence |
VMSDLEKKFIELEAKLVAQPAGQAMPGKSNIFANNEAWRQEMLKQDPEFFNRLANGQSPEYLWIGCADSRVPANQLLDLPAGEVFVHRNIANQCIHSDISFLSVLQYAVQYLKVKHILVCGHYGCGGAKAALGDSRLGLIDNWLRHIRDVRRMNAKYLDKCKDGDEELNRLIELNVLEQVHNVCATSIVQDAWDAGQELTVQGVVYGVGDGKLRDLGVVVNSSDDISKFYRTKSDSGALKAGNPNAPLVQVTKGGESELDSTMEKLTAELVQQTPGKLKEGANRVFVNNENWRQKMLKQDPQFFSNLAHTQTPEILWIGCADSRVPANQIINLPAGEVFVHRNIANQCIHSDMSFLSVLQYAVQYLKVKRVVVCGHYACGGCAAALGDSRLGLIDNWLRHIRDVRRHNQAELSRITDPKDSLNRLIEINVLEQMHNVCATSIVQDAWDAGQELEVQGVVYGVGDGKLRDMGVVAKANDDIG
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
X-ray structure of beta-carbonic anhydrase from the red alga, Porphyridium purpureum, reveals a novel catalytic site for CO(2) hydration.
pubmed doi rcsb |
| molecule keywords |
CARBONIC ANHYDRASE
|
| molecule tags |
Lyase
|
| source organism |
Porphyridium purpureum
|
| total genus |
175
|
| structure length |
481
|
| sequence length |
481
|
| chains with identical sequence |
B
|
| ec nomenclature |
ec
4.2.1.1: Carbonic anhydrase. |
| pdb deposition date | 1999-11-12 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00484 | Pro_CA | Carbonic anhydrase |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 3-Layer(aba) Sandwich | Beta-carbonic Anhydrase; Chain A | Carbonic anhydrase | ||
| Alpha Beta | 3-Layer(aba) Sandwich | Beta-carbonic Anhydrase; Chain A | Carbonic anhydrase |
#chains in the Genus database with same CATH superfamily 1DDZ A; 3E3I A; 2A8D A; 4RXY A; 3E24 A; 3E1V A; 3UCM A; 4YF4 A; 3TEN A; 3E2X A; 5CXK A; 3E1W A; 3LAS A; 4O1K A; 3E31 A; 4O1J A; 5SWC A; 2A8C A; 3QY1 A; 3MF3 A; 4WAK A; 3VQJ A; 1EKJ A; 1G5C A; 5BQ1 A; 3E3G A; 4YF5 A; 3VRK A; 2ESF A; 4ZNZ A; 4WAM A; 3EYX A; 3UCJ A; 4YF6 A; 3UCN A; 2W3N A; 3E3F A; 1YLK A; 1T75 A; 1I6O A; 4WAJ A; 3E2A A; 3UCK A; 1YM3 A; 3E2W A; 3UCO A; 2W3Q A; 3TEO A; 1I6P A; 2A5V A; 5JJ8 A; 3E28 A; #chains in the Genus database with same CATH topology 1DDZ A; 3E3I A; 2A8D A; 4RXY A; 3E24 A; 3E1V A; 3UCM A; 4YF4 A; 3TEN A; 3E2X A; 5CXK A; 3E1W A; 3LAS A; 4O1K A; 3E31 A; 4O1J A; 5SWC A; 2A8C A; 3QY1 A; 3MF3 A; 4WAK A; 3VQJ A; 1EKJ A; 1G5C A; 5BQ1 A; 3E3G A; 4YF5 A; 3VRK A; 2ESF A; 4ZNZ A; 4WAM A; 3EYX A; 3UCJ A; 4YF6 A; 3UCN A; 2W3N A; 3E3F A; 1YLK A; 1T75 A; 1I6O A; 4WAJ A; 3E2A A; 3UCK A; 1YM3 A; 3E2W A; 3UCO A; 2W3Q A; 3TEO A; 1I6P A; 2A5V A; 5JJ8 A; 3E28 A; #chains in the Genus database with same CATH homology 1DDZ A; 3E3I A; 2A8D A; 4RXY A; 3E24 A; 3E1V A; 3UCM A; 4YF4 A; 3TEN A; 3E2X A; 5CXK A; 3E1W A; 3LAS A; 4O1K A; 3E31 A; 4O1J A; 5SWC A; 2A8C A; 3QY1 A; 3MF3 A; 4WAK A; 3VQJ A; 1EKJ A; 1G5C A; 5BQ1 A; 3E3G A; 4YF5 A; 3VRK A; 2ESF A; 4ZNZ A; 4WAM A; 3EYX A; 3UCJ A; 4YF6 A; 3UCN A; 2W3N A; 3E3F A; 1YLK A; 1T75 A; 1I6O A; 4WAJ A; 3E2A A; 3UCK A; 1YM3 A; 3E2W A; 3UCO A; 2W3Q A; 3TEO A; 1I6P A; 2A5V A; 5JJ8 A; 3E28 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
