The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
7
|
sequence length |
48
|
structure length |
48
|
Chain Sequence |
DSITYRVRKGDSLSSIAKRHGVNIKDVMRWNSDTANLQPGDKLTLFVK
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
The Structure of a Lysm Domain from E.Coli Membrane Bound Lytic Murein Transglycosylase D (Mltd)
pubmed doi rcsb |
| molecule tags |
Hydrolase
|
| molecule keywords |
MEMBRANE-BOUND LYTIC MUREIN TRANSGLYCOSYLASE D
|
| total genus |
7
|
| structure length |
48
|
| sequence length |
48
|
| ec nomenclature |
ec
4.2.2.n1: Peptidoglycan lytic exotransglycosylase. |
| pdb deposition date | 2000-03-27 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01476 | LysM | LysM domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | Roll | Membrane-bound Lytic Murein Transglycosylase D; Chain A | LysM domain |
#chains in the Genus database with same CATH superfamily 4B8V A; 3ZQD A; 4B9H A; 2MTZ A; 1Y7M A; 2DJP A; 5K2L A; 5BUM A; 5C8O A; 5C8P A; 4A1I A; 4A1K A; 4A52 A; 2MKX A; 5C8Q B; 1E0G A; 2LTF A; 2L9Y A; 4PXV A; 4A1J A; #chains in the Genus database with same CATH topology 4B8V A; 3ZQD A; 4B9H A; 2MTZ A; 1Y7M A; 2DJP A; 5K2L A; 5BUM A; 5C8O A; 5C8P A; 4A1I A; 4A1K A; 4A52 A; 2MKX A; 5C8Q B; 1E0G A; 2LTF A; 2L9Y A; 4PXV A; 4A1J A; #chains in the Genus database with same CATH homology 4B8V A; 3ZQD A; 4B9H A; 2MTZ A; 1Y7M A; 2DJP A; 5K2L A; 5BUM A; 5C8O A; 5C8P A; 4A1I A; 4A1K A; 4A52 A; 2MKX A; 5C8Q B; 1E0G A; 2LTF A; 2L9Y A; 4PXV A; 4A1J A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
