1EU5A

Structure of e. coli dutpase at 1.45 a
Total Genus 21

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
136
structure length
136
Chain Sequence
MMKKIDVKILDPRVGKEFPLPTYATSGSAGLDLRACLNDAVELAPGDTTLVPTGLAIHIADPSLAAMMLPRSGLGHKHGIVLGNLVGLIDSDYQGQLMISVWNRGQDSFTIQPGERIAQMIFVPVVQAEFNLVEDF

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
TI1 (11-14)TII1 (13-16)TIV1 (14-17)TVIII2 (37-40)TI2 (15-18)TI3 (25-28)TVIII1 (23-26)EMPTYS4 (47-52)S3 (41-43)S9 (98-103)TII2 (44-47)O1 (59-61)TI4 (61-64)TI6 (90-93)S6 (64-70)S11 (115-124)AH1 (72-78)S7 (80-82)TI5 (82-85)TIV2 (84-87)TII3 (112-115)S1 (6-9)S5 (55-58)S2 (30-35)S10 (109-111)S8 (87-89)Updating...
connected with : NaN
molecule tags Hydrolase
publication title Atomic resolution structure of Escherichia coli dUTPase determined ab initio.
pubmed doi rcsb
molecule keywords DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE
total genus 21
structure length 136
sequence length 136
ec nomenclature ec 3.6.1.23: dUTP diphosphatase.
pdb deposition date 2000-04-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00692 dUTPase dUTPase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.40.10 Mainly Beta Distorted Sandwich Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A 1eu5A00
2OKEA 2QLPA 3ZF3A 1SIXA 3ZF5A 4B0HA 2PC5A 5EDDA 1DUTA 3T60A 2J4QA 3TQ5A 4DHKA 4OOPA 2XY3A 1EUWA 4A6AA 1F7DA 1DUPA 2HR6A 2HQUA 2OL0A 4GK6A 3ZF1A 3T6YA 2J4HA 1XS1A 1XS6A 2WE2A 2D4MA 4GCYA 3TPNA 2QXXA 2BAZA 2WE3A 3TRLA 1SM8A 1MQ7A 2PY4A 2XCEA 1SLHA 2OL1A 1VYQA 1PKKA 3LQWA 5ECTA 1DUNA 1F7NA 1EU5A 3ZEZA 2BT1A 4GV8A 3MBQA 3TQ3A 3TPSA 3TP1A 3H6XA 1F7KA 1PKHA 3C3IA 2XX6A 4AOOA 2HRMA 3ZF2A 3HZAA 1SJNA 4OOQA 3TSLA 2HXDA 1F7OA 3ZF4A 3C2TA 3EHWA 3T70A 1SNFA 3I93A 3ARAA 2YZJA 3HHQA 3CA9A 1F7QA 3TPWA 2OKBA 3TRNA 2D4NA 1RNJA 4WRKA 3KM3A 3TPYA 3ECYA 4LHRA 3LOJA 3TQ4A 2ZDCA 1F7RA 5F9KA 3H6DA 2OKDA 1RN8A 1Q5UX 3GF0A 4APZ1 2D4LA 3TS6A 2WE0A 2WE1A 2Y1TA 4XJCA 1SMCA 1F7PA 1SEHA 2BSYA 1DUCA 1Q5HA 3F4FA 3SO2A 5CCOA 1SYLA 2XCDA 3TQZA 1XS4A 5CCTA 2R9QA 1DUDA 1OGHA 2HXBA 2V9XA 3ARNA 2Y8CA 3TTAA 3ZF6A 3T64A 4AOZA 3ZF0A 4AO5A 1PKJA 3MDXA 3P48A
chains in the Genus database with same CATH superfamily
2OKEA 2QLPA 3ZF3A 1SIXA 3ZF5A 4B0HA 2PC5A 5EDDA 1DUTA 3T60A 2J4QA 3TQ5A 4DHKA 4OOPA 2XY3A 1EUWA 4A6AA 1F7DA 1DUPA 2HR6A 2HQUA 2OL0A 4GK6A 3ZF1A 3T6YA 2J4HA 1XS1A 1XS6A 2WE2A 2D4MA 4GCYA 3TPNA 2QXXA 2BAZA 2WE3A 3TRLA 1SM8A 1MQ7A 2PY4A 2XCEA 1SLHA 2OL1A 1VYQA 1PKKA 3LQWA 5ECTA 1DUNA 1F7NA 1EU5A 3ZEZA 2BT1A 4GV8A 3MBQA 3TQ3A 3TPSA 3TP1A 3H6XA 1F7KA 1PKHA 3C3IA 2XX6A 4AOOA 2HRMA 3ZF2A 3HZAA 1SJNA 4OOQA 3TSLA 2HXDA 1F7OA 3ZF4A 3C2TA 3EHWA 3T70A 1SNFA 3I93A 3ARAA 2YZJA 3HHQA 3CA9A 1F7QA 3TPWA 2OKBA 3TRNA 2D4NA 1RNJA 4WRKA 3KM3A 3TPYA 3ECYA 4LHRA 3LOJA 3TQ4A 2ZDCA 1F7RA 5F9KA 3H6DA 2OKDA 1RN8A 1Q5UX 3GF0A 1TULA 2D4LA 4APZ1 3TS6A 2WE0A 2WE1A 2Y1TA 4XJCA 1SMCA 1F7PA 1SEHA 2BSYA 1DUCA 1Q5HA 3F4FA 3SO2A 5CCOA 1SYLA 2XCDA 3TQZA 1XS4A 5CCTA 2R9QA 1DUDA 1OGHA 2HXBA 2V9XA 3ARNA 2Y8CA 3TTAA 3ZF6A 3T64A 4AOZA 3ZF0A 4AO5A 1PKJA 3MDXA 3P48A
chains in the Genus database with same CATH topology
2OKEA 2QLPA 3ZF3A 1SIXA 3ZF5A 4B0HA 2PC5A 5EDDA 1DUTA 3T60A 2J4QA 3TQ5A 4DHKA 4OOPA 2XY3A 1EUWA 4A6AA 1F7DA 1DUPA 2HR6A 2HQUA 2OL0A 4GK6A 3ZF1A 3T6YA 2J4HA 1XS1A 1XS6A 2WE2A 2D4MA 4GCYA 3TPNA 2QXXA 2BAZA 2WE3A 3TRLA 1SM8A 1MQ7A 2PY4A 2XCEA 1SLHA 2OL1A 1VYQA 1PKKA 3LQWA 5ECTA 1DUNA 1F7NA 1EU5A 3ZEZA 2BT1A 4GV8A 3MBQA 3TQ3A 3TPSA 3TP1A 3H6XA 1F7KA 1PKHA 3C3IA 2XX6A 4AOOA 2HRMA 3ZF2A 3HZAA 1SJNA 4OOQA 3TSLA 2HXDA 1F7OA 3ZF4A 3C2TA 3EHWA 3T70A 1SNFA 3I93A 3ARAA 2YZJA 3HHQA 3CA9A 1F7QA 3TPWA 2OKBA 3TRNA 2D4NA 1RNJA 4WRKA 3KM3A 3TPYA 3ECYA 4LHRA 3LOJA 3TQ4A 2ZDCA 1F7RA 5F9KA 3H6DA 2OKDA 1RN8A 1Q5UX 3GF0A 4APZ1 2D4LA 3TS6A 2WE0A 2WE1A 2Y1TA 4XJCA 1SMCA 1F7PA 1SEHA 2BSYA 1DUCA 1Q5HA 3F4FA 3SO2A 5CCOA 1SYLA 2XCDA 3TQZA 1XS4A 5CCTA 2R9QA 1DUDA 1OGHA 2HXBA 2V9XA 3ARNA 2Y8CA 3TTAA 3ZF6A 3T64A 4AOZA 3ZF0A 4AO5A 1PKJA 3MDXA 3P48A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2OKE A;  2QLP A;  3ZF3 A;  1SIX A;  3ZF5 A;  4B0H A;  2PC5 A;  5EDD A;  1DUT A;  3T60 A;  2J4Q A;  3TQ5 A;  4DHK A;  4OOP A;  2XY3 A;  1EUW A;  4A6A A;  1F7D A;  1DUP A;  2HR6 A;  2HQU A;  2OL0 A;  4GK6 A;  3ZF1 A;  3T6Y A;  2J4H A;  1XS1 A;  1XS6 A;  2WE2 A;  2D4M A;  4GCY A;  3TPN A;  2QXX A;  2BAZ A;  2WE3 A;  3TRL A;  1SM8 A;  1MQ7 A;  2PY4 A;  2XCE A;  1SLH A;  2OL1 A;  1VYQ A;  1PKK A;  3LQW A;  5ECT A;  1DUN A;  1F7N A;  1EU5 A;  3ZEZ A;  2BT1 A;  4GV8 A;  3MBQ A;  3TQ3 A;  3TPS A;  3TP1 A;  3H6X A;  1F7K A;  1PKH A;  3C3I A;  2XX6 A;  4AOO A;  2HRM A;  3ZF2 A;  3HZA A;  1SJN A;  4OOQ A;  3TSL A;  2HXD A;  1F7O A;  3ZF4 A;  3C2T A;  3EHW A;  3T70 A;  1SNF A;  3I93 A;  3ARA A;  2YZJ A;  3HHQ A;  3CA9 A;  1F7Q A;  3TPW A;  2OKB A;  3TRN A;  2D4N A;  1RNJ A;  4WRK A;  3KM3 A;  3TPY A;  3ECY A;  4LHR A;  3LOJ A;  3TQ4 A;  2ZDC A;  1F7R A;  5F9K A;  3H6D A;  2OKD A;  1RN8 A;  1Q5U X;  3GF0 A;  4APZ 1;  2D4L A;  3TS6 A;  2WE0 A;  2WE1 A;  2Y1T A;  4XJC A;  1SMC A;  1F7P A;  1SEH A;  2BSY A;  1DUC A;  1Q5H A;  3F4F A;  3SO2 A;  5CCO A;  1SYL A;  2XCD A;  3TQZ A;  1XS4 A;  5CCT A;  2R9Q A;  1DUD A;  1OGH A;  2HXB A;  2V9X A;  3ARN A;  2Y8C A;  3TTA A;  3ZF6 A;  3T64 A;  4AOZ A;  3ZF0 A;  4AO5 A;  1PKJ A;  3MDX A;  3P48 A; 
#chains in the Genus database with same CATH topology
 2OKE A;  2QLP A;  3ZF3 A;  1SIX A;  3ZF5 A;  4B0H A;  2PC5 A;  5EDD A;  1DUT A;  3T60 A;  2J4Q A;  3TQ5 A;  4DHK A;  4OOP A;  2XY3 A;  1EUW A;  4A6A A;  1F7D A;  1DUP A;  2HR6 A;  2HQU A;  2OL0 A;  4GK6 A;  3ZF1 A;  3T6Y A;  2J4H A;  1XS1 A;  1XS6 A;  2WE2 A;  2D4M A;  4GCY A;  3TPN A;  2QXX A;  2BAZ A;  2WE3 A;  3TRL A;  1SM8 A;  1MQ7 A;  2PY4 A;  2XCE A;  1SLH A;  2OL1 A;  1VYQ A;  1PKK A;  3LQW A;  5ECT A;  1DUN A;  1F7N A;  1EU5 A;  3ZEZ A;  2BT1 A;  4GV8 A;  3MBQ A;  3TQ3 A;  3TPS A;  3TP1 A;  3H6X A;  1F7K A;  1PKH A;  3C3I A;  2XX6 A;  4AOO A;  2HRM A;  3ZF2 A;  3HZA A;  1SJN A;  4OOQ A;  3TSL A;  2HXD A;  1F7O A;  3ZF4 A;  3C2T A;  3EHW A;  3T70 A;  1SNF A;  3I93 A;  3ARA A;  2YZJ A;  3HHQ A;  3CA9 A;  1F7Q A;  3TPW A;  2OKB A;  3TRN A;  2D4N A;  1RNJ A;  4WRK A;  3KM3 A;  3TPY A;  3ECY A;  4LHR A;  3LOJ A;  3TQ4 A;  2ZDC A;  1F7R A;  5F9K A;  3H6D A;  2OKD A;  1RN8 A;  1Q5U X;  3GF0 A;  1TUL A;  2D4L A;  4APZ 1;  3TS6 A;  2WE0 A;  2WE1 A;  2Y1T A;  4XJC A;  1SMC A;  1F7P A;  1SEH A;  2BSY A;  1DUC A;  1Q5H A;  3F4F A;  3SO2 A;  5CCO A;  1SYL A;  2XCD A;  3TQZ A;  1XS4 A;  5CCT A;  2R9Q A;  1DUD A;  1OGH A;  2HXB A;  2V9X A;  3ARN A;  2Y8C A;  3TTA A;  3ZF6 A;  3T64 A;  4AOZ A;  3ZF0 A;  4AO5 A;  1PKJ A;  3MDX A;  3P48 A; 
#chains in the Genus database with same CATH homology
 2OKE A;  2QLP A;  3ZF3 A;  1SIX A;  3ZF5 A;  4B0H A;  2PC5 A;  5EDD A;  1DUT A;  3T60 A;  2J4Q A;  3TQ5 A;  4DHK A;  4OOP A;  2XY3 A;  1EUW A;  4A6A A;  1F7D A;  1DUP A;  2HR6 A;  2HQU A;  2OL0 A;  4GK6 A;  3ZF1 A;  3T6Y A;  2J4H A;  1XS1 A;  1XS6 A;  2WE2 A;  2D4M A;  4GCY A;  3TPN A;  2QXX A;  2BAZ A;  2WE3 A;  3TRL A;  1SM8 A;  1MQ7 A;  2PY4 A;  2XCE A;  1SLH A;  2OL1 A;  1VYQ A;  1PKK A;  3LQW A;  5ECT A;  1DUN A;  1F7N A;  1EU5 A;  3ZEZ A;  2BT1 A;  4GV8 A;  3MBQ A;  3TQ3 A;  3TPS A;  3TP1 A;  3H6X A;  1F7K A;  1PKH A;  3C3I A;  2XX6 A;  4AOO A;  2HRM A;  3ZF2 A;  3HZA A;  1SJN A;  4OOQ A;  3TSL A;  2HXD A;  1F7O A;  3ZF4 A;  3C2T A;  3EHW A;  3T70 A;  1SNF A;  3I93 A;  3ARA A;  2YZJ A;  3HHQ A;  3CA9 A;  1F7Q A;  3TPW A;  2OKB A;  3TRN A;  2D4N A;  1RNJ A;  4WRK A;  3KM3 A;  3TPY A;  3ECY A;  4LHR A;  3LOJ A;  3TQ4 A;  2ZDC A;  1F7R A;  5F9K A;  3H6D A;  2OKD A;  1RN8 A;  1Q5U X;  3GF0 A;  4APZ 1;  2D4L A;  3TS6 A;  2WE0 A;  2WE1 A;  2Y1T A;  4XJC A;  1SMC A;  1F7P A;  1SEH A;  2BSY A;  1DUC A;  1Q5H A;  3F4F A;  3SO2 A;  5CCO A;  1SYL A;  2XCD A;  3TQZ A;  1XS4 A;  5CCT A;  2R9Q A;  1DUD A;  1OGH A;  2HXB A;  2V9X A;  3ARN A;  2Y8C A;  3TTA A;  3ZF6 A;  3T64 A;  4AOZ A;  3ZF0 A;  4AO5 A;  1PKJ A;  3MDX A;  3P48 A; 
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similar chains in the Genus database (?% sequence similarity)
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