1F75 | Genus

Total Genus 84

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	84
sequence length	229
structure length	217
Chain Sequence	NINAAQIPKHIAIIMDGNGRWAKQKKMPRIKGHYEGMQTVRKITRYASDLGVKYLTLYAFNYLMKLPGDFLNTFLPELIEKNVKVETIGFIDDLPDHTKKAVLEAKEKTKHNTGLTLVFALNYGGRKEIISAVQLIAERYKSGEISLDEISETHFNEYLFTANMPDPELLIRTSGEERLSNFLIWQCSYSEFVFIDEFWPDFNEESLAQCISIYQNR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 217 atoms

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217 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transferase
source organism	Micrococcus luteus
publication title	Crystal structure of cis-prenyl chain elongating enzyme, undecaprenyl diphosphate synthase. pubmed doi rcsb
molecule keywords	UNDECAPRENYL PYROPHOSPHATE SYNTHETASE
total genus	84
structure length	217
sequence length	229
chains with identical sequence	B
ec nomenclature	ec 2.5.1.31: Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-
pdb deposition date	2000-06-26

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01255	Prenyltransf	Putative undecaprenyl diphosphate synthase

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.40.1180.10	Alpha Beta	3-Layer(aba) Sandwich	Undecaprenyl pyrophosphate synthetase	Decaprenyl diphosphate synthase-like	1f75A00

3WYJA 5KH2A 5HC6A 3TH8A 5HXQA 3WQKA 3WYIA 1X09A 2DTNA 5CQBA 4KT8A 2VG0A 5KH5A 4Q9OA 2VFWA 3WQLA 5KH4A 4CMVA 2VG4A 4H2JA 1X08A 1JP3A 3WQNA 4CMXA 5HXTA 3SGVA 1X06A 4Q9MA 5HXOA 2E9CA 4H2MA 3UGSA 1UEHA 3WQMA 3SGTA 4CMWA 5HC8A 3SGXA 2VG2A 1X07A 5HC7A 1V7UA 2VG3A 2E9AA 4H8EA 5HXNA 3QASA 2VG1A 4H3CA 4H2OA 4H3AA 5CQJA 4ONCA 4H38A 4U82A 3SH0A 2E98A 5HXPA 2D2RA 2E99A 2E9DA 1F75A
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 3WYJ A;  5KH2 A;  5HC6 A;  3TH8 A;  5HXQ A;  3WQK A;  3WYI A;  1X09 A;  2DTN A;  5CQB A;  4KT8 A;  2VG0 A;  5KH5 A;  4Q9O A;  2VFW A;  3WQL A;  5KH4 A;  4CMV A;  2VG4 A;  4H2J A;  1X08 A;  1JP3 A;  3WQN A;  4CMX A;  5HXT A;  3SGV A;  1X06 A;  4Q9M A;  5HXO A;  2E9C A;  4H2M A;  3UGS A;  1UEH A;  3WQM A;  3SGT A;  4CMW A;  5HC8 A;  3SGX A;  2VG2 A;  1X07 A;  5HC7 A;  1V7U A;  2VG3 A;  2E9A A;  4H8E A;  5HXN A;  3QAS A;  2VG1 A;  4H3C A;  4H2O A;  4H3A A;  5CQJ A;  4ONC A;  4H38 A;  4U82 A;  3SH0 A;  2E98 A;  5HXP A;  2D2R A;  2E99 A;  2E9D A;  1F75 A; 
#chains in the Genus database with same CATH topology
 3WYJ A;  5KH2 A;  5HC6 A;  3TH8 A;  5HXQ A;  3WQK A;  3WYI A;  1X09 A;  2DTN A;  5CQB A;  4KT8 A;  2VG0 A;  5KH5 A;  4Q9O A;  2VFW A;  3WQL A;  5KH4 A;  4CMV A;  2VG4 A;  4H2J A;  1X08 A;  1JP3 A;  3WQN A;  4CMX A;  5HXT A;  3SGV A;  1X06 A;  4Q9M A;  5HXO A;  2E9C A;  4H2M A;  3UGS A;  1UEH A;  3WQM A;  3SGT A;  4CMW A;  5HC8 A;  3SGX A;  2VG2 A;  1X07 A;  5HC7 A;  1V7U A;  2VG3 A;  2E9A A;  4H8E A;  5HXN A;  3QAS A;  2VG1 A;  4H3C A;  4H2O A;  4H3A A;  5CQJ A;  4ONC A;  4H38 A;  4U82 A;  3SH0 A;  2E98 A;  5HXP A;  2D2R A;  2E99 A;  2E9D A;  1F75 A; 
#chains in the Genus database with same CATH homology
 3WYJ A;  5KH2 A;  5HC6 A;  3TH8 A;  5HXQ A;  3WQK A;  3WYI A;  1X09 A;  2DTN A;  5CQB A;  4KT8 A;  2VG0 A;  5KH5 A;  4Q9O A;  2VFW A;  3WQL A;  5KH4 A;  4CMV A;  2VG4 A;  4H2J A;  1X08 A;  1JP3 A;  3WQN A;  4CMX A;  5HXT A;  3SGV A;  1X06 A;  4Q9M A;  5HXO A;  2E9C A;  4H2M A;  3UGS A;  1UEH A;  3WQM A;  3SGT A;  4CMW A;  5HC8 A;  3SGX A;  2VG2 A;  1X07 A;  5HC7 A;  1V7U A;  2VG3 A;  2E9A A;  4H8E A;  5HXN A;  3QAS A;  2VG1 A;  4H3C A;  4H2O A;  4H3A A;  5CQJ A;  4ONC A;  4H38 A;  4U82 A;  3SH0 A;  2E98 A;  5HXP A;  2D2R A;  2E99 A;  2E9D A;  1F75 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1F75A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations