1F7Q | Genus

Total Genus 14

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	14
sequence length	116
structure length	116
Chain Sequence	MIIEGDGILDKRSEDAGYDLLAAKEIHLLPGEVKVIPTGVKLMLPKGYWGLIIGKSSIGSKGLDVLGGVIDEGYRGEIGVIMINVSRKSITLMERQKIAQLIILPCKHEVLEQGKV

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Viral protein, hydrolase
source organism	Feline immunodeficiency virus
publication title	Structures of feline immunodeficiency virus dUTP pyrophosphatase and its nucleotide complexes in three crystal forms. pubmed doi rcsb
molecule keywords	POL POLYPROTEIN
total genus	14
structure length	116
sequence length	116
chains with identical sequence	B, C
ec nomenclature	ec 2.7.7.49: RNA-directed DNA polymerase.
pdb deposition date	2000-06-27

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00692	dUTPase	dUTPase

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.70.40.10	Mainly Beta	Distorted Sandwich	Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A	Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A	1f7qA00

2D4MA 3TQ4A 2R9QA 1F7KA 2XCDA 2XCEA 3KM3A 3C3IA 3TPWA 3GF0A 1SNFA 2J4HA 2XX6A 1RNJA 2OL0A 1F7DA 2WE1A 4GCYA 1EU5A 2OL1A 2PY4A 3ARAA 3H6XA 2XY3A 5ECTA 2HXDA 3C2TA 3T60A 3TS6A 1XS6A 4AOZA 3T6YA 3ECYA 3HHQA 1SJNA 3P48A 1SIXA 4GK6A 2OKEA 3H6DA 1F7RA 3TQZA 1PKHA 1DUCA 1SLHA 4XJCA 2PC5A 2BAZA 3TQ3A 2J4QA 3T64A 2D4LA 3TTAA 3ZF1A 3CA9A 3TQ5A 2ZDCA 1PKKA 1DUPA 3HZAA 3F4FA 3I93A 3TPNA 3TRLA 2BSYA 4WRKA 5CCTA 1F7NA 1DUTA 3TRNA 1SEHA 3ZF4A 2WE3A 3ZF3A 2YZJA 5F9KA 3ZF5A 2HRMA 1VYQA 1SM8A 4LHRA 3ZF0A 5EDDA 2OKBA 4OOPA 2QLPA 1F7PA 3TP1A 1EUWA 1F7QA 1SYLA 1Q5HA 3SO2A 3ZEZA 2Y8CA 1MQ7A 4A6AA 4AOOA 2HR6A 1DUNA 4GV8A 4DHKA 3MDXA 3T70A 2V9XA 2HXBA 2HQUA 4OOQA 1RN8A 4AO5A 3ZF6A 3EHWA 1XS4A 4APZ1 1DUDA 2WE0A 3TSLA 3ZF2A 1Q5UX 1F7OA 3TPYA 2D4NA 3MBQA 1XS1A 2QXXA 3TPSA 2BT1A 2Y1TA 1OGHA 4B0HA 3LQWA 3LOJA 2WE2A 2OKDA 3ARNA 1PKJA 5CCOA 1SMCA
chains in the Genus database with same CATH superfamily

2D4MA 3TQ4A 2R9QA 1F7KA 2XCDA 2XCEA 3KM3A 3C3IA 3TPWA 3GF0A 1SNFA 2J4HA 2XX6A 1RNJA 2OL0A 1F7DA 2WE1A 4GCYA 1EU5A 2OL1A 2PY4A 3ARAA 3H6XA 2XY3A 5ECTA 2HXDA 3C2TA 3T60A 3TS6A 1XS6A 4AOZA 3T6YA 3ECYA 3HHQA 1SJNA 3P48A 1SIXA 4GK6A 2OKEA 3H6DA 1F7RA 3TQZA 1PKHA 1DUCA 1SLHA 4XJCA 2PC5A 2BAZA 3TQ3A 2J4QA 3T64A 2D4LA 3TTAA 3ZF1A 3CA9A 3TQ5A 2ZDCA 1PKKA 1DUPA 3HZAA 3F4FA 3I93A 3TPNA 3TRLA 2BSYA 4WRKA 5CCTA 1F7NA 1DUTA 3TRNA 1SEHA 3ZF4A 2WE3A 3ZF3A 2YZJA 5F9KA 3ZF5A 2HRMA 1VYQA 1SM8A 4LHRA 3ZF0A 5EDDA 2OKBA 4OOPA 2QLPA 1F7PA 3TP1A 1EUWA 1F7QA 1SYLA 1Q5HA 3SO2A 3ZEZA 2Y8CA 1MQ7A 4A6AA 4AOOA 2HR6A 1DUNA 4GV8A 4DHKA 3MDXA 3T70A 1TULA 2V9XA 2HXBA 2HQUA 4OOQA 1RN8A 4AO5A 3ZF6A 3EHWA 1XS4A 4APZ1 1DUDA 2WE0A 3TSLA 3ZF2A 1Q5UX 1F7OA 3TPYA 2D4NA 3MBQA 1XS1A 2QXXA 3TPSA 2BT1A 2Y1TA 1OGHA 4B0HA 3LQWA 3LOJA 2WE2A 2OKDA 3ARNA 1PKJA 5CCOA 1SMCA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2D4M A;  3TQ4 A;  2R9Q A;  1F7K A;  2XCD A;  2XCE A;  3KM3 A;  3C3I A;  3TPW A;  3GF0 A;  1SNF A;  2J4H A;  2XX6 A;  1RNJ A;  2OL0 A;  1F7D A;  2WE1 A;  4GCY A;  1EU5 A;  2OL1 A;  2PY4 A;  3ARA A;  3H6X A;  2XY3 A;  5ECT A;  2HXD A;  3C2T A;  3T60 A;  3TS6 A;  1XS6 A;  4AOZ A;  3T6Y A;  3ECY A;  3HHQ A;  1SJN A;  3P48 A;  1SIX A;  4GK6 A;  2OKE A;  3H6D A;  1F7R A;  3TQZ A;  1PKH A;  1DUC A;  1SLH A;  4XJC A;  2PC5 A;  2BAZ A;  3TQ3 A;  2J4Q A;  3T64 A;  2D4L A;  3TTA A;  3ZF1 A;  3CA9 A;  3TQ5 A;  2ZDC A;  1PKK A;  1DUP A;  3HZA A;  3F4F A;  3I93 A;  3TPN A;  3TRL A;  2BSY A;  4WRK A;  5CCT A;  1F7N A;  1DUT A;  3TRN A;  1SEH A;  3ZF4 A;  2WE3 A;  3ZF3 A;  2YZJ A;  5F9K A;  3ZF5 A;  2HRM A;  1VYQ A;  1SM8 A;  4LHR A;  3ZF0 A;  5EDD A;  2OKB A;  4OOP A;  2QLP A;  1F7P A;  3TP1 A;  1EUW A;  1F7Q A;  1SYL A;  1Q5H A;  3SO2 A;  3ZEZ A;  2Y8C A;  1MQ7 A;  4A6A A;  4AOO A;  2HR6 A;  1DUN A;  4GV8 A;  4DHK A;  3MDX A;  3T70 A;  2V9X A;  2HXB A;  2HQU A;  4OOQ A;  1RN8 A;  4AO5 A;  3ZF6 A;  3EHW A;  1XS4 A;  4APZ 1;  1DUD A;  2WE0 A;  3TSL A;  3ZF2 A;  1Q5U X;  1F7O A;  3TPY A;  2D4N A;  3MBQ A;  1XS1 A;  2QXX A;  3TPS A;  2BT1 A;  2Y1T A;  1OGH A;  4B0H A;  3LQW A;  3LOJ A;  2WE2 A;  2OKD A;  3ARN A;  1PKJ A;  5CCO A;  1SMC A; 
#chains in the Genus database with same CATH topology
 2D4M A;  3TQ4 A;  2R9Q A;  1F7K A;  2XCD A;  2XCE A;  3KM3 A;  3C3I A;  3TPW A;  3GF0 A;  1SNF A;  2J4H A;  2XX6 A;  1RNJ A;  2OL0 A;  1F7D A;  2WE1 A;  4GCY A;  1EU5 A;  2OL1 A;  2PY4 A;  3ARA A;  3H6X A;  2XY3 A;  5ECT A;  2HXD A;  3C2T A;  3T60 A;  3TS6 A;  1XS6 A;  4AOZ A;  3T6Y A;  3ECY A;  3HHQ A;  1SJN A;  3P48 A;  1SIX A;  4GK6 A;  2OKE A;  3H6D A;  1F7R A;  3TQZ A;  1PKH A;  1DUC A;  1SLH A;  4XJC A;  2PC5 A;  2BAZ A;  3TQ3 A;  2J4Q A;  3T64 A;  2D4L A;  3TTA A;  3ZF1 A;  3CA9 A;  3TQ5 A;  2ZDC A;  1PKK A;  1DUP A;  3HZA A;  3F4F A;  3I93 A;  3TPN A;  3TRL A;  2BSY A;  4WRK A;  5CCT A;  1F7N A;  1DUT A;  3TRN A;  1SEH A;  3ZF4 A;  2WE3 A;  3ZF3 A;  2YZJ A;  5F9K A;  3ZF5 A;  2HRM A;  1VYQ A;  1SM8 A;  4LHR A;  3ZF0 A;  5EDD A;  2OKB A;  4OOP A;  2QLP A;  1F7P A;  3TP1 A;  1EUW A;  1F7Q A;  1SYL A;  1Q5H A;  3SO2 A;  3ZEZ A;  2Y8C A;  1MQ7 A;  4A6A A;  4AOO A;  2HR6 A;  1DUN A;  4GV8 A;  4DHK A;  3MDX A;  3T70 A;  1TUL A;  2V9X A;  2HXB A;  2HQU A;  4OOQ A;  1RN8 A;  4AO5 A;  3ZF6 A;  3EHW A;  1XS4 A;  4APZ 1;  1DUD A;  2WE0 A;  3TSL A;  3ZF2 A;  1Q5U X;  1F7O A;  3TPY A;  2D4N A;  3MBQ A;  1XS1 A;  2QXX A;  3TPS A;  2BT1 A;  2Y1T A;  1OGH A;  4B0H A;  3LQW A;  3LOJ A;  2WE2 A;  2OKD A;  3ARN A;  1PKJ A;  5CCO A;  1SMC A; 
#chains in the Genus database with same CATH homology
 2D4M A;  3TQ4 A;  2R9Q A;  1F7K A;  2XCD A;  2XCE A;  3KM3 A;  3C3I A;  3TPW A;  3GF0 A;  1SNF A;  2J4H A;  2XX6 A;  1RNJ A;  2OL0 A;  1F7D A;  2WE1 A;  4GCY A;  1EU5 A;  2OL1 A;  2PY4 A;  3ARA A;  3H6X A;  2XY3 A;  5ECT A;  2HXD A;  3C2T A;  3T60 A;  3TS6 A;  1XS6 A;  4AOZ A;  3T6Y A;  3ECY A;  3HHQ A;  1SJN A;  3P48 A;  1SIX A;  4GK6 A;  2OKE A;  3H6D A;  1F7R A;  3TQZ A;  1PKH A;  1DUC A;  1SLH A;  4XJC A;  2PC5 A;  2BAZ A;  3TQ3 A;  2J4Q A;  3T64 A;  2D4L A;  3TTA A;  3ZF1 A;  3CA9 A;  3TQ5 A;  2ZDC A;  1PKK A;  1DUP A;  3HZA A;  3F4F A;  3I93 A;  3TPN A;  3TRL A;  2BSY A;  4WRK A;  5CCT A;  1F7N A;  1DUT A;  3TRN A;  1SEH A;  3ZF4 A;  2WE3 A;  3ZF3 A;  2YZJ A;  5F9K A;  3ZF5 A;  2HRM A;  1VYQ A;  1SM8 A;  4LHR A;  3ZF0 A;  5EDD A;  2OKB A;  4OOP A;  2QLP A;  1F7P A;  3TP1 A;  1EUW A;  1F7Q A;  1SYL A;  1Q5H A;  3SO2 A;  3ZEZ A;  2Y8C A;  1MQ7 A;  4A6A A;  4AOO A;  2HR6 A;  1DUN A;  4GV8 A;  4DHK A;  3MDX A;  3T70 A;  2V9X A;  2HXB A;  2HQU A;  4OOQ A;  1RN8 A;  4AO5 A;  3ZF6 A;  3EHW A;  1XS4 A;  4APZ 1;  1DUD A;  2WE0 A;  3TSL A;  3ZF2 A;  1Q5U X;  1F7O A;  3TPY A;  2D4N A;  3MBQ A;  1XS1 A;  2QXX A;  3TPS A;  2BT1 A;  2Y1T A;  1OGH A;  4B0H A;  3LQW A;  3LOJ A;  2WE2 A;  2OKD A;  3ARN A;  1PKJ A;  5CCO A;  1SMC A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

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1F7QA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations