1HONA

Structure of guanine nucleotide (gppcp) complex of adenylosuccinate synthetase from escherichia coli at ph 6.5 and 25 degree celsius
Total Genus 137
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
137
sequence length
431
structure length
431
Chain Sequence
GNNVVVLGTQWGDEGKGKIVDLLTERAKYVVRYQGGHNAGHTLVINGEKTVLHLIPSGILRENVTSIIGNGVVLSPAALMKEMKELEDRGIPVRERLLLSEACPLILDYHVALDNAREKARGAKAIGTTGRGIGPAYEDKVARRGLRVGDLFDKETFAEKLKEVMEYHNFQLVNYYKAEAVDYQKVLDDTMAVADILTSMVVDVSDLLDQARQRGDFVMFEGAQGTLLDIDHGTYPYVTSSNTTAGGVATGSGLGPRYVDYVLGILKAYSTRVGAGPFPTELFDETGEFLCKQGNEFGATTGRRRRTGWLDTVAVRRAVQLNSLSGFCLTKLDVLDGLKEVKLCVAYRMPDGREVTTTPLAADDWKGVEPIYETMPGWSESTFGVKDRSGLPQAALNYIKRIEELTGVPIDIISTGPDRTETMILRDPFDA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Refined crystal structures of guanine nucleotide complexes of adenylosuccinate synthetase from Escherichia coli.
pubmed doi rcsb
molecule tags Ligase (synthetase)
source organism Escherichia coli
molecule keywords ADENYLOSUCCINATE SYNTHETASE
total genus 137
structure length 431
sequence length 431
chains with identical sequence B
ec nomenclature ec 6.3.4.4: Adenylosuccinate synthase.
pdb deposition date 1996-04-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00709 Adenylsucc_synt Adenylosuccinate synthetase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.300.10 Mainly Alpha Orthogonal Bundle Adenylosuccinate Synthetase, subunit A; domain 2 Adenylosuccinate Synthetase, subunit A, domain 2 1honA02
3.40.440.10 Alpha Beta 3-Layer(aba) Sandwich Adenylosuccinate Synthetase; Chain A, domain 1 Adenylosuccinate Synthetase, subunit A, domain 1 1honA01
3.90.170.10 Alpha Beta Alpha-Beta Complex Adenylosuccinate Synthetase; Chain A, domain 3 Adenylosuccinate Synthetase, subunit A, domain 3 1honA03
1CG0A 1KJXA 1LONA 1IWEA 3UE9A 1LNYA 2DGNA 1ADIA 1HOOA 3R7TA 5I34A 1GIMA 2D7UA 1CG1A 1J4BA 1KSZA 2V40A 1CG3A 1P9BA 1SOOA 4M9DA 1NHTA 1CH8A 1HONA 2GCQA 1KKBA 1ADEA 1SONA 1LOOA 1DJ2A 1MEZA 1QF5A 1QF4A 1HOPA 1KKFA 1DJ3A 1MF0A 1CG4A 3HIDA 1MF1A 1JUYA 1GINA 4M0GA 1CIBA
chains in the Genus database with same CATH superfamily
1CG0A 1KJXA 1LONA 1IWEA 3UE9A 1LNYA 2DGNA 1ADIA 1HOOA 3R7TA 5I34A 1GIMA 2D7UA 1CG1A 1J4BA 1KSZA 2V40A 1CG3A 1P9BA 1SOOA 4M9DA 1NHTA 1CH8A 1HONA 2GCQA 1KKBA 1ADEA 1SONA 1LOOA 1DJ2A 1MEZA 1QF5A 1QF4A 1HOPA 1KKFA 1DJ3A 1MF0A 1CG4A 3HIDA 1MF1A 1JUYA 1GINA 4M0GA 1CIBA
chains in the Genus database with same CATH topology
1CG0A 1KJXA 1LONA 1IWEA 3UE9A 1LNYA 2DGNA 1ADIA 1HOOA 3R7TA 5I34A 1GIMA 2D7UA 1CG1A 1J4BA 1KSZA 2V40A 1CG3A 1P9BA 1SOOA 4M9DA 1NHTA 1CH8A 1HONA 2GCQA 1KKBA 1ADEA 1SONA 1LOOA 1DJ2A 1MEZA 1QF5A 1QF4A 1HOPA 1KKFA 1DJ3A 1MF0A 1CG4A 3HIDA 1MF1A 1JUYA 1GINA 4M0GA 1CIBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1CG0 A;  1KJX A;  1LON A;  1IWE A;  3UE9 A;  1LNY A;  2DGN A;  1ADI A;  1HOO A;  3R7T A;  5I34 A;  1GIM A;  2D7U A;  1CG1 A;  1J4B A;  1KSZ A;  2V40 A;  1CG3 A;  1P9B A;  1SOO A;  4M9D A;  1NHT A;  1CH8 A;  1HON A;  2GCQ A;  1KKB A;  1ADE A;  1SON A;  1LOO A;  1DJ2 A;  1MEZ A;  1QF5 A;  1QF4 A;  1HOP A;  1KKF A;  1DJ3 A;  1MF0 A;  1CG4 A;  3HID A;  1MF1 A;  1JUY A;  1GIN A;  4M0G A;  1CIB A; 
#chains in the Genus database with same CATH topology
 1CG0 A;  1KJX A;  1LON A;  1IWE A;  3UE9 A;  1LNY A;  2DGN A;  1ADI A;  1HOO A;  3R7T A;  5I34 A;  1GIM A;  2D7U A;  1CG1 A;  1J4B A;  1KSZ A;  2V40 A;  1CG3 A;  1P9B A;  1SOO A;  4M9D A;  1NHT A;  1CH8 A;  1HON A;  2GCQ A;  1KKB A;  1ADE A;  1SON A;  1LOO A;  1DJ2 A;  1MEZ A;  1QF5 A;  1QF4 A;  1HOP A;  1KKF A;  1DJ3 A;  1MF0 A;  1CG4 A;  3HID A;  1MF1 A;  1JUY A;  1GIN A;  4M0G A;  1CIB A; 
#chains in the Genus database with same CATH homology
 1CG0 A;  1KJX A;  1LON A;  1IWE A;  3UE9 A;  1LNY A;  2DGN A;  1ADI A;  1HOO A;  3R7T A;  5I34 A;  1GIM A;  2D7U A;  1CG1 A;  1J4B A;  1KSZ A;  2V40 A;  1CG3 A;  1P9B A;  1SOO A;  4M9D A;  1NHT A;  1CH8 A;  1HON A;  2GCQ A;  1KKB A;  1ADE A;  1SON A;  1LOO A;  1DJ2 A;  1MEZ A;  1QF5 A;  1QF4 A;  1HOP A;  1KKF A;  1DJ3 A;  1MF0 A;  1CG4 A;  3HID A;  1MF1 A;  1JUY A;  1GIN A;  4M0G A;  1CIB A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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